Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00533 ATGCAGTTTCCAATGCCACATTTCTTCTCTGTTTCTCTTCTCATTTCCCTTCTTCTTTTTTCCAATTTTTCTCTCTGTTTTTCACAAGATTACATTATTGGCGGTGGTGGTGGCGGCGGCGGCGGCGATGATGATGATGAAGCCAAGCCGGCTGCGCCACCCCCAGAGCAGAATCAATGTAATGGGATATTTTTGTCTTATACGTTTATTTCGCGGGAGAAAGAGCTGCCACGGTTGAAGAATGCCACGGCTCAGTCATGGGCGTTTAAGTCGGAGGCGGTGATTTTGAATGCGGGATTGACGGAGCTGAAGGCATGGAAGATGTTTATTGGATTTCATCACCATGAGATTTTGGTGTCGGCAAATGGTGCGGTGGTGATGGATGGGTCGGATTTCCCTGTGGATGTTGGGAATGGGACTACTTTGGCTGGGTATCCAATGACGGATCTGAAAACGTCGATCGAAACCGCTGGTGATATTAATCAGATTCAAGCGACGGTGGAGTTCACAGGAACGCAATTCGGAATTAAGCCGCCGGGTGTTCCGATGCCGAAGACCATCCGTCTTGAGAACGATGGATTTAAGTGCCCTGCCCCTCGCCATCGCGGTAAGAGAACAATGCATGTATGCTGCAAAAAGGATCCAAAGTTCAAGGTGAAGAAAGAAAAAAAGACCAAATTTTTCGCTCGCCAAAATGGAGACCTCTCACTCACTTACGATGTAATGCAAGCTTATGGAAATAATTATCTCGCTCAAGTTACAATAGACAACAACAATCCTCTTGGCCGTCTCGATCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTCAAAGCATGAGAGGAGCTTACACTCATACGAGAGATTTATCTCAATGCGTTTATGGTACCGCTGGCCAATACTATCAAGATTTCGACTTCTCTCAAGTCATGAGTTGCGATAAGCGACCCATAATCGCCGACCTTCCAGCCGATCGTATCAATGATGATAAAGTCGGCAAGTTGCCGTATTGTTGTAGGAATGGAAGCTTATTGCCAACATTAATGGATGAGAGTAAAGCAAGGTCTATTTTTCAACTACAAGTCTATAAGCTTCCACCGGATATGAACAGAACCGCCCTTAATCCGCCACAGAAATGGAAGATCTCTGGAGTTCTGAATCCGAAATACGTTTGTGCTGCACCACTCCGAGTTGAACCAACGGAGTTCCCTGACCCGAGTGGACTTCAATCAACGAGTACCTCAATTGCAAGTTGGCAAATTATATGCAACATTACAAGGCCAAAGGTGAAGCAATCAAAATGCTGTGTTTCATTTTCAGCTTATTATAATGACTCTGTTATTCCATGCAATACTTGTGCTTGTGGGTGTGACGATATTGATACTGATACTTGCAATCCAAATGCACATTCAATGCTCCTACCTCCAGAAGCACTTTTGGTTCCATTTTCCAACAGGTCAGCCAAAGCTAGAGCTTGGGCTAAAATTAAGCATTACCGAAATCCCAAAAAGCTGCCCTGTCCTGATAATTGTGGGGTTAGCATAAATTGGCATATCAACTCTGATTATACTAATGGATGGTCTGCAAGATTAACACTCTTCAATTGGGAAGATTATCCATTTGAAGATTGGTTTACTGCCATTCAGTTAAACAAGGCCGGTAGGGGTTACGAAAACGTTTATTCCTTCAATGGAACCCGGCTTCCCAAAATAAAAAATACAATCTTCCTTCAAGGTTTGCCTGGTTTAGCTTACTTGATGGGTGAGGTTAATGGGACCAATCCTAAAACTGATCCAAGAGTTCCTGGAAAGCAACAATCTGTTATTTCTTTCACCAAGAAGGGTATACGCAACCTCGACATACTACGGGGCGATGGTTTCCCGAACAAAGTCTTTTTCAATGGCGAAGAATGTGCGCTTCCAAAGGATATTCCCACGGCAAGTTCAGCCCACCACCGTTCTTGCGACGTTTTCATGTCACTTATCTTCATCTTAGCTCTTACTTTCGTGTTTATGACCGATCGCTTCCATTGA 2040 44.07 MQFPMPHFFSVSLLISLLLFSNFSLCFSQDYIIGGGGGGGGGDDDDEAKPAAPPPEQNQCNGIFLSYTFISREKELPRLKNATAQSWAFKSEAVILNAGLTELKAWKMFIGFHHHEILVSANGAVVMDGSDFPVDVGNGTTLAGYPMTDLKTSIETAGDINQIQATVEFTGTQFGIKPPGVPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKKDPKFKVKKEKKTKFFARQNGDLSLTYDVMQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLSQCVYGTAGQYYQDFDFSQVMSCDKRPIIADLPADRINDDKVGKLPYCCRNGSLLPTLMDESKARSIFQLQVYKLPPDMNRTALNPPQKWKISGVLNPKYVCAAPLRVEPTEFPDPSGLQSTSTSIASWQIICNITRPKVKQSKCCVSFSAYYNDSVIPCNTCACGCDDIDTDTCNPNAHSMLLPPEALLVPFSNRSAKARAWAKIKHYRNPKKLPCPDNCGVSINWHINSDYTNGWSARLTLFNWEDYPFEDWFTAIQLNKAGRGYENVYSFNGTRLPKIKNTIFLQGLPGLAYLMGEVNGTNPKTDPRVPGKQQSVISFTKKGIRNLDILRGDGFPNKVFFNGEECALPKDIPTASSAHHRSCDVFMSLIFILALTFVFMTDRFH* 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4452146 4455247 - CsaV3_3G005330.1 Csa03g00533 521438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00533 679 PANTHER COBRA-LIKE PROTEIN 7 11 678 - -
Csa03g00533 679 Pfam COBRA-like protein 249 428 IPR006918 GO:0010215|GO:0031225
Csa03g00533 679 PANTHER COBRA-LIKE PROTEIN 10 11 678 - -
Csa03g00533 679 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00533 Csa-Chr3:4452146 Csa03g02318 Csa-Chr3:20725839 0 dispersed
Csa03g00533 Csa-Chr3:4452146 Csa01g00618 Csa-Chr1:3946497 1.97E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00533 - - csv:101216608 1355.12