Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00554 | ATGGCGGAGGAGTTTCAGAGCAGTGGAAACTGGTGGGAAGCGGCTTCTAGAATATCCCCTTCTTCCTCCTCCATCACCACCTTTGTCGACCACTCCGACTCCGCCGCCGCCGCCTCTGATCCCAATTTGCACATCATGGGTTTAGGCCTCGATTGGAACCAACCCCTCTTTAGGGGCGGCGGAGAAAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAACCGGATAATATGAATTTAAATATGGAAGAAACAGGGCAGCAACAGCAACAGCAACAGCAAGAACAGCAACAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCGGGGGAATCACCGGCGACGGATTTCAAACCAATAAACAGAGGATTTTCATTAGATCATCATCATCATCATCATCATCATCATCATCAAGCTCAACCCCAGTTCAGTAGTCCTTCTCACTATAGCTCAGGCGACAGCGCCGTCACCAGTTATCCAATCGACACAAACGCGAACTTGTACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCTGCCGGCGGCGAACAACAACAACAACAGCAGCAGCAAATCTCAATGGGTATGAACTTCCCTTACAATTCCCATTTCGGAATGAACTCGGGGGAGTTAATGACAGGAGGAGCGTCATGGTCGCCGTCCAAAGTGCCTCCGTATTTAAGAAACTCGCCGCCAAAAGCGGGAGCGGGGGGAAATCCACATAGTCAGTTACAATTTTCGAATAATACGGCGTTTTGGAACGCGTCGGATATGAAAGAGGTTAGGCCGAGTTATTTTGCGCCGTCGTATAACGCCGCGGCGGGTTTTACCGAGAAATCAAAGAATATATCGGAAGTGGGTGATTCGGTAACAACGAAAAAAAGTGGAAATGATAATAATCAGCAATCAGCCGCTGCTAAAAGGCCCAGAAATGAAACGCCTTCACCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTTTCTGAAGCAATTGAATACATAAAGTTTCTACATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGTAGTACAGCAACAACACCAGCAGCAGAGAAATGAGAAATCAGTTAAGGAAGGAGAAGGAGGAAAGCAAGATTTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCATGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA | 1317 | 46.7 | MAEEFQSSGNWWEAASRISPSSSSITTFVDHSDSAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPDNMNLNMEETGQQQQQQQQEQQQQQIQWMRSEKLYSGESPATDFKPINRGFSLDHHHHHHHHHHQAQPQFSSPSHYSSGDSAVTSYPIDTNANLYGNSATLLQGLLAAGGEQQQQQQQQISMGMNFPYNSHFGMNSGELMTGGASWSPSKVPPYLRNSPPKAGAGGNPHSQLQFSNNTAFWNASDMKEVRPSYFAPSYNAAAGFTEKSKNISEVGDSVTTKKSGNDNNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAVVQQQHQQQRNEKSVKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR* | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4716554 | 4722201 | - | CsaV3_3G005540.1 | Csa03g00554 | 521459 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 383 | 402 | - | - | |
Csa03g00554 | 438 | CDD | bHLH_AtbHLH_like | 320 | 371 | IPR045239 | - | |
Csa03g00554 | 438 | SMART | finulus | 325 | 369 | IPR011598 | GO:0046983 | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 112 | 158 | - | - | |
Csa03g00554 | 438 | Gene3D | - | 324 | 396 | IPR036638 | GO:0046983 | |
Csa03g00554 | 438 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 25 | 428 | - | - | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 290 | 321 | - | - | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 127 | 141 | - | - | |
Csa03g00554 | 438 | PANTHER | TRANSCRIPTION FACTOR BHLH123 | 25 | 428 | - | - | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 142 | 158 | - | - | |
Csa03g00554 | 438 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 324 | 378 | IPR036638 | GO:0046983 | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 83 | 102 | - | - | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 290 | 312 | - | - | |
Csa03g00554 | 438 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 314 | 363 | IPR011598 | GO:0046983 | |
Csa03g00554 | 438 | MobiDBLite | consensus disorder prediction | 229 | 248 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01146 | Csa-Chr1:7106592 | Csa03g00554 | Csa-Chr3:4716554 | 4.05E-47 | dispersed | |
Csa03g00554 | Csa-Chr3:4716554 | Csa03g04238 | Csa-Chr3:37108680 | 2.71E-33 | dispersed | |
Csa03g00554 | Csa-Chr3:4716554 | Csa06g03565 | Csa-Chr6:28902722 | 4.62E-68 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00554 | - | - | csv:101220471 | 777.319 |