Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00554 ATGGCGGAGGAGTTTCAGAGCAGTGGAAACTGGTGGGAAGCGGCTTCTAGAATATCCCCTTCTTCCTCCTCCATCACCACCTTTGTCGACCACTCCGACTCCGCCGCCGCCGCCTCTGATCCCAATTTGCACATCATGGGTTTAGGCCTCGATTGGAACCAACCCCTCTTTAGGGGCGGCGGAGAAAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAACCGGATAATATGAATTTAAATATGGAAGAAACAGGGCAGCAACAGCAACAGCAACAGCAAGAACAGCAACAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCGGGGGAATCACCGGCGACGGATTTCAAACCAATAAACAGAGGATTTTCATTAGATCATCATCATCATCATCATCATCATCATCATCAAGCTCAACCCCAGTTCAGTAGTCCTTCTCACTATAGCTCAGGCGACAGCGCCGTCACCAGTTATCCAATCGACACAAACGCGAACTTGTACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCTGCCGGCGGCGAACAACAACAACAACAGCAGCAGCAAATCTCAATGGGTATGAACTTCCCTTACAATTCCCATTTCGGAATGAACTCGGGGGAGTTAATGACAGGAGGAGCGTCATGGTCGCCGTCCAAAGTGCCTCCGTATTTAAGAAACTCGCCGCCAAAAGCGGGAGCGGGGGGAAATCCACATAGTCAGTTACAATTTTCGAATAATACGGCGTTTTGGAACGCGTCGGATATGAAAGAGGTTAGGCCGAGTTATTTTGCGCCGTCGTATAACGCCGCGGCGGGTTTTACCGAGAAATCAAAGAATATATCGGAAGTGGGTGATTCGGTAACAACGAAAAAAAGTGGAAATGATAATAATCAGCAATCAGCCGCTGCTAAAAGGCCCAGAAATGAAACGCCTTCACCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTTTCTGAAGCAATTGAATACATAAAGTTTCTACATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGTAGTACAGCAACAACACCAGCAGCAGAGAAATGAGAAATCAGTTAAGGAAGGAGAAGGAGGAAAGCAAGATTTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCATGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1317 46.7 MAEEFQSSGNWWEAASRISPSSSSITTFVDHSDSAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPDNMNLNMEETGQQQQQQQQEQQQQQIQWMRSEKLYSGESPATDFKPINRGFSLDHHHHHHHHHHQAQPQFSSPSHYSSGDSAVTSYPIDTNANLYGNSATLLQGLLAAGGEQQQQQQQQISMGMNFPYNSHFGMNSGELMTGGASWSPSKVPPYLRNSPPKAGAGGNPHSQLQFSNNTAFWNASDMKEVRPSYFAPSYNAAAGFTEKSKNISEVGDSVTTKKSGNDNNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAVVQQQHQQQRNEKSVKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4716554 4722201 - CsaV3_3G005540.1 Csa03g00554 521459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00554 438 MobiDBLite consensus disorder prediction 383 402 - -
Csa03g00554 438 CDD bHLH_AtbHLH_like 320 371 IPR045239 -
Csa03g00554 438 SMART finulus 325 369 IPR011598 GO:0046983
Csa03g00554 438 MobiDBLite consensus disorder prediction 112 158 - -
Csa03g00554 438 Gene3D - 324 396 IPR036638 GO:0046983
Csa03g00554 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 428 - -
Csa03g00554 438 MobiDBLite consensus disorder prediction 290 321 - -
Csa03g00554 438 MobiDBLite consensus disorder prediction 127 141 - -
Csa03g00554 438 PANTHER TRANSCRIPTION FACTOR BHLH123 25 428 - -
Csa03g00554 438 MobiDBLite consensus disorder prediction 142 158 - -
Csa03g00554 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 378 IPR036638 GO:0046983
Csa03g00554 438 MobiDBLite consensus disorder prediction 83 102 - -
Csa03g00554 438 MobiDBLite consensus disorder prediction 290 312 - -
Csa03g00554 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 314 363 IPR011598 GO:0046983
Csa03g00554 438 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01146 Csa-Chr1:7106592 Csa03g00554 Csa-Chr3:4716554 4.05E-47 dispersed
Csa03g00554 Csa-Chr3:4716554 Csa03g04238 Csa-Chr3:37108680 2.71E-33 dispersed
Csa03g00554 Csa-Chr3:4716554 Csa06g03565 Csa-Chr6:28902722 4.62E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00554 - - csv:101220471 777.319