Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00565 ATGGCTTCACATTACAAAATCCTCTTCATTTCCATAACTTTTTTCACACTTCTTTCAAATAATGTCTCTGCCAATCCCATCATCAAATGGTGCAAAACGACGCCCCATCCAAGAGTTTGCGTTTCCCTCATGTCCCCAATCAAACCTCCACCACAAAACAGACGGGAGTTTCGACAAATGGCCATTCAAACCACTTTGGAAAAAGCCGCCGAAGCCAGAGCTTACACTGCTCGCTTCGGTCCGACATGTAAAACCTCGCGCCAGAGAACCGCGTGGACTGACTGTTTCAAGCTCTACAACGACGTCGTTCTCCAATTAAACCGCACACTCCATTGCGTCGTTACGGATGAAGCAATCCACCGCCGCAGTTGTACGGATTTCGATGCGCAAACCTGGCTTAGCTCTGCTCTTACTGACATCGATTTATGCAACTCCGGCGCCGCGGATCTCAATGTGACGGATTTTATAACGCCGATCAAATGCTTGAATGTTTCGAAGATGATTAGTAATTGCTTGGCTATTAATGGTGGATTTTTGGAGGAAGAAGGGGTTAAATATGATGATGGTAGAAATGGGTCGTTTCCGATGTGGGTTTCGGAAGGTGATCGCAAGTTGTTGGAGTCGAGGCCGGGGAGGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCGGGGACATTTCGGAGGGTTCAGGCGGCGATTGATGCGGCGGCGAGGAGGCGTGGGAGGGGGAGATTTATAATTTATGTAAAAAGAGGGGTATATAGAGAAAATATTGAAGTTGGAAATGATAATGGGAATATAATGTTGGTGGGAGATGGGATGAGATTTACGGTGATCACAAGTGGAAGAAGTGTCGCCGCCGGTTTCACCACCTTCAGTTCGGCAACCGCTGGTATCCAAGGTCCAGGCTTCATAGCTCGAGACATAAGGTTCGTGAACACAGCCGGTCCACGAATGGGCCAAGCAGTGGCACTACGATCATCATCAGACCTATCAGTGTTTCATCGATGTAGCTTTGAAGGTTACCAAGACACACTAATGGTCCTTTCACAGAGGCAATTCTATAAACAATGTTACGTTTACGGTACAATCGACTTCATTTTCGGCAACGCGGCAGTAGTTTTACAAAATTGCATGATTTACGTTAGAAGGCCTTTAAAGGGGCAAGTCAATGTGATCACAGCCCAAGGTCGAGAGGACCCATTTCAAAACAGCGGAATATCAATCCACAACTCACAAATTCGAGCGGCGGCTGACTTGCGACCCATGGTTGGCTCGGTGAAGACGTACTTGGGTAGGCCATGGAAGAAGTATTCACGGACTGTGATAATGAGAAGCTACATTGATTGGTTGGTTAGCCCAGCCGGATGGTTGGCGTGGCAAAGTAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTACCGTAATATTGGGCCAAGAGCTTCAACGCGGTTTAGAGTTAAATGGCCTGGCTTTCATGTCATTAAAAGCCCAAATGTGGCATCTAAGTTTAGTGTTCAGAGACTTATTGCTGGCCAGACATGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGAGTTTGA 1590 47.36 MASHYKILFISITFFTLLSNNVSANPIIKWCKTTPHPRVCVSLMSPIKPPPQNRREFRQMAIQTTLEKAAEARAYTARFGPTCKTSRQRTAWTDCFKLYNDVVLQLNRTLHCVVTDEAIHRRSCTDFDAQTWLSSALTDIDLCNSGAADLNVTDFITPIKCLNVSKMISNCLAINGGFLEEEGVKYDDGRNGSFPMWVSEGDRKLLESRPGRVRANLVVAKDGSGTFRRVQAAIDAAARRRGRGRFIIYVKRGVYRENIEVGNDNGNIMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYVYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMVGSVKTYLGRPWKKYSRTVIMRSYIDWLVSPAGWLAWQSSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIKSPNVASKFSVQRLIAGQTWLPATGVPFKLGV* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4852552 4855070 + CsaV3_3G005650.1 Csa03g00565 521470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00565 529 Pfam Pectinesterase 216 514 IPR000070 GO:0030599|GO:0042545
Csa03g00565 529 SMART PMEI_2 23 174 IPR006501 GO:0004857
Csa03g00565 529 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 7 528 - -
Csa03g00565 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
Csa03g00565 529 PANTHER PECTINESTERASE 7 528 - -
Csa03g00565 529 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Csa03g00565 529 SUPERFAMILY Pectin lyase-like 214 527 IPR011050 -
Csa03g00565 529 Pfam Plant invertase/pectin methylesterase inhibitor 29 174 IPR006501 GO:0004857
Csa03g00565 529 Gene3D - 211 529 IPR012334 -
Csa03g00565 529 CDD PMEI-like_3 30 178 - -
Csa03g00565 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 177 IPR035513 -
Csa03g00565 529 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Csa03g00565 529 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00565 Csa-Chr3:4852552 Csa03g01619 Csa-Chr3:12092582 0 dispersed
Csa03g00565 Csa-Chr3:4852552 Csa05g02010 Csa-Chr5:23451164 2.87E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00565 K01051 - csv:101213944 1058.9