Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00574 ATGAGTTCAAACGTATCAGCAATTCCAAACTCTTTTGAAGTGATTCGAAGGTCCGCTCAATTTCAAGCGAGTGTTTGGGGAGACTACTTTCTTTCCTATCATTCTCTCCCTCCGGAAAAAGGCAACAAGGTCATGGAGAAACAAACGGAAGAATTGAAAGAAGAAATAAAAATGGAGTTGGTTTCTACAACAAAAGATGAACCTGAGAAATTGAGACTCATCGATTTAATCCAACGCTTAGGCGTTTGTTATCATTTCGAAAATGAAATCAACAACATACTTCAACAACTCCATCATATTACTATTACTTCAGAAAAGAATGGTGATGATAATCCTTACAATATGACTCTCTGTTTCAGACTTCTAAGACAACAAGGCTACAACGTATCATCGGAGCCATTCGATAGGTTTCGAGGAAAATGGGAAAGTTCATACGATAACAATGTAGAAGAACTCTTGAGTTTATATGAAGCATCGCAATTGAGGATGCAAGGAGAAGAAGCATTAGACGAAGCGTTTTGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCCAAGACCCAACCACCGATCCAATGGTTGCAGCGGAAATCCGGCAAGCTCTGAAGTGGCCGATGTACAAGAATCTACCAAGGCTTAAAGCAAGACACCACATTGGTTTGTACAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGGATTTCAACAAACTGCAAAACCTTCATCAGACAGAGATTGCTTACATCTCAAAGTGGTGGGATGATTATGGTTTTGCTGAAAAACTGTCATTTGCAAGGAACAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTGAACCTCAACTTTTAACCGCTAGACTTATTATGACCAAAGTTATTGCTATTGGATCAATGTTAGATGACATTTATGATGTTTATGGCACTTTTGAAGAACTCAAACTCTTGACCCTTGCACTTGAGAGATGGGACAAGAGTGAAACAAAGCAACTTCCAAATTATATGAAGATGTACTACGAGGCTTTGTTAGATGTTTTTGAAGAAATTGAACAAGAAATGAGCCAAAAGGAAACAGAAACAACACCATATTGCATCCATCACATGAAAGAAGCGACAAAGGAGCTTGGAAGGGTATTTTTGGTAGAGGCCACATGGTGTAAGGAAGGATACACCCCAAAAGTGGAAGAATACTTGGATATTGCTTTAATATCTTTTGGCCACAAATTGCTTATGGTAACAGCTCTCTTAGGGATGGGTTCACACATGGCCACACAACAAATCGTTCAATGGATCACCTCCATGCCTAATATTCTCAAAGCCTCCGCTGTTATTTGTAGGCTCATGAACGACATCGTTTCACATAAGTTTGAACAAGAGCGAGGTCATGTGGCCTCTGCCATTGAATGTTACATGGAACAAAATCATTTATCAGAGTACGAAGCCCTAATTGCATTACGTAAACAAATAGATGATTTATGGAAGGATATGGTTGAGAATTATTGTGCTGTTATCACAGAAGATGAGGTTCCAAGGGGTGTTCTTATGAGAGTTTTGAACCTTACAAGATTATTTAATGTGATTTACAAAGATGGAGATGGATATACACAATCTCATGGCTCCACAAAAGCCCATATCAAATCTTTGCTTGTTGATTCTGTACCACTCTAA 1686 39.03 MSSNVSAIPNSFEVIRRSAQFQASVWGDYFLSYHSLPPEKGNKVMEKQTEELKEEIKMELVSTTKDEPEKLRLIDLIQRLGVCYHFENEINNILQQLHHITITSEKNGDDNPYNMTLCFRLLRQQGYNVSSEPFDRFRGKWESSYDNNVEELLSLYEASQLRMQGEEALDEAFCFATAQLEAIVQDPTTDPMVAAEIRQALKWPMYKNLPRLKARHHIGLYSEKPWRNESLLNFAKMDFNKLQNLHQTEIAYISKWWDDYGFAEKLSFARNRIVEGYFFALGIFFEPQLLTARLIMTKVIAIGSMLDDIYDVYGTFEELKLLTLALERWDKSETKQLPNYMKMYYEALLDVFEEIEQEMSQKETETTPYCIHHMKEATKELGRVFLVEATWCKEGYTPKVEEYLDIALISFGHKLLMVTALLGMGSHMATQQIVQWITSMPNILKASAVICRLMNDIVSHKFEQERGHVASAIECYMEQNHLSEYEALIALRKQIDDLWKDMVENYCAVITEDEVPRGVLMRVLNLTRLFNVIYKDGDGYTQSHGSTKAHIKSLLVDSVPL* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4925550 4930927 - CsaV3_3G005740.1 Csa03g00574 521479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00574 561 SUPERFAMILY Terpenoid synthases 228 558 IPR008949 -
Csa03g00574 561 CDD Terpene_cyclase_plant_C1 16 557 IPR044814 GO:0010333|GO:0016102
Csa03g00574 561 PANTHER ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASE 1 561 - -
Csa03g00574 561 Coils Coil 345 365 - -
Csa03g00574 561 Gene3D Farnesyl Diphosphate Synthase 24 549 IPR008949 -
Csa03g00574 561 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 224 IPR008930 -
Csa03g00574 561 Pfam Terpene synthase family, metal binding domain 232 501 IPR005630 GO:0000287|GO:0010333|GO:0016829
Csa03g00574 561 PANTHER OS04G0344100 PROTEIN-RELATED 1 561 - -
Csa03g00574 561 Pfam Terpene synthase, N-terminal domain 26 201 IPR001906 GO:0010333|GO:0016829
Csa03g00574 561 SFLD Terpene Cyclase Like 1 C Terminal Domain 228 559 IPR034741 -
Csa03g00574 561 Gene3D - 65 227 IPR036965 GO:0010333|GO:0016829
Csa03g00574 561 SFLD Isoprenoid Synthase Type I 228 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00574 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211540 1133.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01581 Csa-Chr2:14959422 Csa03g00574 Csa-Chr3:4925550 3.88E-102 dispersed
Csa02g01582 Csa-Chr2:14966133 Csa03g00574 Csa-Chr3:4925550 1.14E-107 dispersed
Csa03g00574 Csa-Chr3:4925550 Csa03g00578 Csa-Chr3:4980160 6.68E-161 dispersed
Csa03g00574 Csa-Chr3:4925550 Csa03g00575 Csa-Chr3:4940197 5.10E-22 tandem
Csa02g02738 Csa-Chr2:23860891 Csa03g00574 Csa-Chr3:4925550 8.20E-145 transposed
Csa03g00284 Csa-Chr3:2305917 Csa03g00574 Csa-Chr3:4925550 9.87E-165 transposed
Csa07g01217 Csa-Chr7:11941684 Csa03g00574 Csa-Chr3:4925550 4.67E-24 transposed
Csa01g01144 Csa-Chr1:7076693 Csa03g00574 Csa-Chr3:4925550 1.47E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00574 Csa_Chr03 FPKM 5.291667 4.7988 0.0 0.0 0.756161 0.0 0.562272 7.085467 3.758824 6.25851