Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00578 ATGAAAACCAATGATATTTCTGATGTTAACCGTTCTCTTGCAAATTTTCATCCTACTATTTGGAAGGAACAATTCCTTTCATTTGATGATGCATTGAAAGTAGATGATGGCATGGAATTAGAAAGAATTGAAAAGTTGAAAGAAGAAATAAGGATGATGGTGACTGCTTCCATGGAAAATCCATTGGCAAATCTAAATTTGGTTGATTCAATCCAACGGCTGGGAGTATCTTATCATTTTGAAGATGAGATTGAACAATTCTTAGAACATATATATGTGTCTTATAATAATTCCCTTCTATTGAGTAACAAAGATAGTGAAGATGACGATCTTCATTTTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAGGATTTCATGTGATATATTTTTGAAGTTCATGGACAAGAATGGAAAATTTAAAGAGTCATTGGTTGAGGATGAAAGAGGAATATTGAGCCTATATGAAGCATCACATATGAGGGGGCATGGAGAAGCTTTGCTTGAGGAAGCTCTTGAATTTACAACCACACATCTTAAAGCATATATTCATCTTTACTCAAATATTAATCCAAATTTTGCATCTGAAGTTAGTAATGCATTGAAATTGCCTATTAGAAAATGTGTTCCAAGAATCAAGGCAAGAGAGTATTTTCAAATTTACCAGCAACATCCTTCTCACAGTGAGACTTTGCTTGAATTCTCTAAACTAGACTTCAACATATTACAAAAACTTCATCAAAAGGAGCTAAGCGAAATCTGCAGGTGGTGGAAGGATTTAGATGTCCCAACAAAGTTCCCTTTTGCAAGAGATAGAATTGTAGAGTGTTATTTTTGGACGTTGGGAGCATACTTTGAACCTCAATACAACGTTGGGAGGAAAATGTTAACCAAAGTAATTGCAATTTCTTCAATTTTAGATGATATTTACGATGCCTATGGAACATTTGAAGAACTCCAAGTCCTCGCCCCAGCAATTCAAAGGTGGGATAGAAGCATGGTGCATACACTTCCCGAGTACATGAAACCTTTTTATGTAGCAATGTTTGAAGTTTATGAGGAAATTAGCAAAGAGATTGGCAAGGATCAAAATTCTCTCCATCTTCAAGTTGCAATAGGAGGAATAAAAAAGTTATCTGAATCCTATTTTGAAGAAGCTAAATGGTTAAATAAAAAGTATAAACCAAGCTTTAAGGAGTACATGGAATTGGCATTAAATACCACAGGCTATACCTTGCTTATATCCATTTCTTTTCTTGGATTGGGTGATCACATTGTAACAAACGAGGTTCTTCAATGGCTTTCCAATGGACCTCAAATTATTAAAGCCTCAACTATCATTTGTAGACTCATGGACGACATCGCTTCCCACAAGTTTGAACAAGAAAGGGAGCATGTAGCTTCTGCCGTTGAATCGTACATGGAGCAATATGATTGTTCAGAAGAAGAAGCTTGTGTTGAACTTCATAAGGAAGTGGTTGATGCATGGAAGGATACAAATGAAGCATTTTATCGCCCATTTAATGTACCATTGCCTGTTCTAATGCGTGTACTCAATTTTTCAAGAGTTATGAACTTGCTTTATTTGGATGAAGATGGATACACAAATGCAAAGAGTAGAACAAAGTTTCTTATTAAATCTCTTCTTGTTGACCCACTGCCTTGTTAA 1677 35.42 MKTNDISDVNRSLANFHPTIWKEQFLSFDDALKVDDGMELERIEKLKEEIRMMVTASMENPLANLNLVDSIQRLGVSYHFEDEIEQFLEHIYVSYNNSLLLSNKDSEDDDLHFTALLFRLLRQQGYRISCDIFLKFMDKNGKFKESLVEDERGILSLYEASHMRGHGEALLEEALEFTTTHLKAYIHLYSNINPNFASEVSNALKLPIRKCVPRIKAREYFQIYQQHPSHSETLLEFSKLDFNILQKLHQKELSEICRWWKDLDVPTKFPFARDRIVECYFWTLGAYFEPQYNVGRKMLTKVIAISSILDDIYDAYGTFEELQVLAPAIQRWDRSMVHTLPEYMKPFYVAMFEVYEEISKEIGKDQNSLHLQVAIGGIKKLSESYFEEAKWLNKKYKPSFKEYMELALNTTGYTLLISISFLGLGDHIVTNEVLQWLSNGPQIIKASTIICRLMDDIASHKFEQEREHVASAVESYMEQYDCSEEEACVELHKEVVDAWKDTNEAFYRPFNVPLPVLMRVLNFSRVMNLLYLDEDGYTNAKSRTKFLIKSLLVDPLPC* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4980160 4983994 - CsaV3_3G005780.1 Csa03g00578 521483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00578 558 CDD Terpene_cyclase_plant_C1 11 555 IPR044814 GO:0010333|GO:0016102
Csa03g00578 558 SFLD Isoprenoid Synthase Type I 232 556 - -
Csa03g00578 558 Pfam Terpene synthase, N-terminal domain 21 204 IPR001906 GO:0010333|GO:0016829
Csa03g00578 558 SUPERFAMILY Terpenoid synthases 230 557 IPR008949 -
Csa03g00578 558 PANTHER TERPENE SYNTHASE 2-RELATED 7 536 - -
Csa03g00578 558 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 17 230 IPR008930 -
Csa03g00578 558 Pfam Terpene synthase family, metal binding domain 235 501 IPR005630 GO:0000287|GO:0010333|GO:0016829
Csa03g00578 558 PANTHER OS04G0344100 PROTEIN-RELATED 7 536 - -
Csa03g00578 558 Gene3D - 59 230 IPR036965 GO:0010333|GO:0016829
Csa03g00578 558 Gene3D Farnesyl Diphosphate Synthase 18 545 IPR008949 -
Csa03g00578 558 SFLD Terpene Cyclase Like 1 C Terminal Domain 232 556 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00578 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211452 1117.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00369 Csa-Chr3:3102592 Csa03g00578 Csa-Chr3:4980160 2.15E-159 dispersed
Csa03g00370 Csa-Chr3:3116915 Csa03g00578 Csa-Chr3:4980160 4.70E-99 dispersed
Csa03g00574 Csa-Chr3:4925550 Csa03g00578 Csa-Chr3:4980160 6.68E-161 dispersed
Csa03g00575 Csa-Chr3:4940197 Csa03g00578 Csa-Chr3:4980160 7.59E-142 dispersed
Csa03g00576 Csa-Chr3:4956424 Csa03g00578 Csa-Chr3:4980160 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00578 Csa_Chr03 FPKM 0.341536 0.31114 1.895832 1.90197 10.294402 12.532984 12.473838 2.381072 1.951233 2.260824