Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00581 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTACACTGTAAATCAGAGCCATCAGATGTTCATGACCCGAAAAGTAAAAAGAATTTGGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAAGATCAGGTTGCTCAAGGTCTATAGCAAATCTCAAAGATGTCATCAATGGCGGCAGCAAAAGACATTTGGATAAACCCCCAAGTTGCAGTCCAAGATCCATTGGTAGCAGTGAGTTTCTCAACCCAATAACCCACGAAGTTATTCTCAGCAACTCAAAATGCGAGCTCAAAATCACCGGCTTTCATGGTGGTTTCCCCCAAGATCTTCCTCCAGCCGATACTCACGGCGGAACTTCCACCTTCGTCGGTACTCTGACACCCGGCACCCCCGGCCCCGGTGGCCACCCGTCAATGCATTACTTCAATCCTTCCTTGAGGTCTTCTTCGAAAAAATTCTCTTTTAGAGAGGGGTTTGGTAGCTCTAATAAATCTGGCGGCGGCGCTGGCGGAGGAGCCCGCGGTACTGGAATTCATTTGAGTAACAGAATCTCTTTGGAAACAGAGAATAGTAGGAACGGATGTTCTTCTGCGGTTACTTGCCATAAATGTGGAGAGCAATTCAACAAGTGGGATGCTGCTGAAGCTCATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGAAAAATTGTGGAGATCATATGCAGAACAAGTTGGTTAAAGTCCGAGAATCAAAGTGGAAGAATAGAAAGAGTCTTGAAAGTTCACAATATGCAACGAACCCTAGCTCGTTTCGAAGAGTATCGCGAGACAGTTAAGATCAAAGCCAGCAAGCTCCCAAAGAAGCACCCTCGGTGTCTTGCCGATGGGAACGAGCTCCTACGATTCTACGGCACGACAGTTGGGTGCTTGCTTGGTCTTAATGGCTCATCCAGCCTATGCATATCGGAGAAATGCTGCGTTTGTAGGATCATACGTAACGGGTTCTCGGCAAAGACAGAGATGGAAGAAGGGATAGGGGTGTTCACAACGTCAACGAGCGCAAGAGCATTCAGCTCGATCAAGGGATCGGGAGGGGACGAGGGGATGACGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCAGGGAGGGTTCATAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAAACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGTTGCATTCAAATATAGAAGAACTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1308 46.56 MPTVWLSLKKSLHCKSEPSDVHDPKSKKNLGAILTRKTGGGGRSGCSRSIANLKDVINGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSKCELKITGFHGGFPQDLPPADTHGGTSTFVGTLTPGTPGPGGHPSMHYFNPSLRSSSKKFSFREGFGSSNKSGGGAGGGARGTGIHLSNRISLETENSRNGCSSAVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVGCLLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMEEGIGVFTTSTSARAFSSIKGSGGDEGMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP* 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5040183 5042605 - CsaV3_3G005810.1 Csa03g00581 521486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00581 435 SUPERFAMILY ADP-ribosylation 225 434 - -
Csa03g00581 435 MobiDBLite consensus disorder prediction 59 78 - -
Csa03g00581 435 PANTHER - 2 435 - -
Csa03g00581 435 MobiDBLite consensus disorder prediction 158 177 - -
Csa03g00581 435 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 435 - -
Csa03g00581 435 ProSitePatterns Zinc finger C2H2 type domain signature. 202 223 IPR013087 -
Csa03g00581 435 Gene3D - 224 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00581 Csa-Chr3:5040183 Csa06g03559 Csa-Chr6:28879871 1.96E-63 dispersed
Csa03g04274 Csa-Chr3:37462852 Csa03g00581 Csa-Chr3:5040183 4.58E-62 transposed
Csa05g00403 Csa-Chr5:2635203 Csa03g00581 Csa-Chr3:5040183 1.97E-30 transposed
Csa05g01505 Csa-Chr5:17444431 Csa03g00581 Csa-Chr3:5040183 9.84E-77 transposed
Csa06g01436 Csa-Chr6:12247447 Csa03g00581 Csa-Chr3:5040183 1.66E-55 transposed
Csa03g00581 Csa-Chr3:5040183 Csa03g02277 Csa-Chr3:20266289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31117 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00581 - - csv:101208986 825.854