Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00583 ATGGACTCTTTCCCTCCAGCATTGTTGGCTTTTAACTTACTCCTCTATCTCTTCACTTATGTTGCTGCCACTGATTCCTTAACTGCTCAAGACCCATATCTCAAAGATGGCTTTAGTCTTGTTTCCAGTAATGGAAACTTCGAATTGGGTTTCTTCAGTCCCGGTCTTTCGAGAGATCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCCGTTTGGGTTGCGAATAGGAACACCCCAATCAATGATTCATCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTACGCTTTACAGCCATGATTCCACCGCCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAATCCCCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGAAAGATGAAAATCCCTTAAACTACTCCTGGCAAAGTTTTGATTACCCCACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATTAATAGAAGATTAGACGCTTGGAAGAATCCGAATGACCCATCACCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAATCTGTCATGTGGAAAGGTTCACAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACCAGTAGACCACTAGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAGGATGAAGTTTACTACCAATACTCTGTTCCAAATAAGTCCCATACTGTGATGGTGGTGATGAACCAATCCAATTACTTGCGCATAATGTACTTGTGGTCTGCAACCGAGAGACAGTGGAGACTTTATACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCGGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATAAACTGTGGGGATGAAGTTGGGTTTGCACCGCTCAACCAGCTGAAATTGCCAGACACAAAGCGTACTTGGGTCAACAAAAGCATGGATCTTGAAGAGTGCAAGCAAAAATGCTTGAGTAATTGCTCTTGTATGGCTTATGCAAATACAAACATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATCGACTTGAAATTGATTCCGGACGCAGGACAGGATTTATATGTTAAAATGCTAGCATCAGAATTAGTCAAGCGTGGGGAGGTACAAAAAACTGATAGATTGAAGCCTAAGATGAAGATTTCTTTGGCTGTGATTGCTCCCAGTTTAGGTTTGGCTATCCTCTTCATAGGCCTATACATTTTCAAAAAGAGATCAACCGTCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTTTCGATTGATAATAAGTTGGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCAGTGAAGAGACTTTCGCGGAGTTCTGGACAAGGAATGAACGAATTTAAGAACGAAGTAATCCTGATTGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGAAGAGAAAATGTTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGAACACAACGTCAATTATTAGATTGGTCACAACGATACCACATTATATGTGGAATTGCTAGAGGACTCGTGTATCTTCATCAAGATTCTCGATTGAGGATTATACATAGGGATTTAAAAGCAAGTAATGTTTTACTTGATACGGATATGAATCCCAAAATTTCTGATTTTGGTCTAGCTAAAACTTGTGGTGGAGATCAAACTGAAGGGAGAACAATAAAAGTGGTTGGAACTTATGGATACATGGCACCAGAATATGCTTTCGATGGACGATTCTCAGTAAAATCGGATGCTTTTAGTTACGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGGAGTAGAAGTTTCTGCCACTTGAACGACCAAAATGTTATTGCATATGCTTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATCGACGACGCCATTCGAGAAATGTGCATAATTTCGGAGGTATTGAGATGTATCAACATCAGTTTGTTGTGTGTTCAACAAAATCCCGATGATCGACCCACAATGTCATCGGTGATTATGATGTTAGGTTGTGAAATTCCTTTGTCGCAACCGAAACAACCTGGTTTTTTCATAGAAAATGAAGCCATTTCAAGGAAAATTAGCTCAAGTAAAGACAAATCAAGTTCAACTAATGAATTAACTATTACACTGCCAGATCCAAGGTAA 2454 40.67 MDSFPPALLAFNLLLYLFTYVAATDSLTAQDPYLKDGFSLVSSNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRNTPINDSSGVLVMNITTGNLTLYSHDSTAIVWSARLLRKIPNGVLQLLDTGNLVLRDRKDENPLNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVPNKSHTVMVVMNQSNYLRIMYLWSATERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLINCGDEVGFAPLNQLKLPDTKRTWVNKSMDLEECKQKCLSNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKRGEVQKTDRLKPKMKISLAVIAPSLGLAILFIGLYIFKKRSTVKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNKLGEGGFGPVYKGKLTNGQDIAVKRLSRSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSQRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDTDMNPKISDFGLAKTCGGDQTEGRTIKVVGTYGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNVIAYAWRLWKEGNPEELIDDAIREMCIISEVLRCINISLLCVQQNPDDRPTMSSVIMMLGCEIPLSQPKQPGFFIENEAISRKISSSKDKSSSTNELTITLPDPR* 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5050849 5055299 - CsaV3_3G005830.1 Csa03g00583 521488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00583 817 SMART blect_4 31 154 IPR001480 -
Csa03g00583 817 SMART ntp_6 343 422 IPR003609 -
Csa03g00583 817 CDD PAN_AP_plant 340 421 - -
Csa03g00583 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Csa03g00583 817 CDD STKc_IRAK 507 771 - -
Csa03g00583 817 Gene3D - 19 151 IPR036426 -
Csa03g00583 817 ProSiteProfiles Protein kinase domain profile. 501 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00583 817 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Csa03g00583 817 CDD B_lectin 33 154 IPR001480 -
Csa03g00583 817 SMART serkin_6 501 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00583 817 PANTHER - 24 814 - -
Csa03g00583 817 PIRSF SRK 3 817 IPR024171 GO:0004674
Csa03g00583 817 Gene3D Phosphorylase Kinase; domain 1 464 576 - -
Csa03g00583 817 MobiDBLite consensus disorder prediction 797 817 - -
Csa03g00583 817 MobiDBLite consensus disorder prediction 798 817 - -
Csa03g00583 817 Gene3D Transferase(Phosphotransferase) domain 1 577 777 - -
Csa03g00583 817 Pfam D-mannose binding lectin 73 180 IPR001480 -
Csa03g00583 817 Pfam Protein tyrosine and serine/threonine kinase 502 770 IPR001245 GO:0004672|GO:0006468
Csa03g00583 817 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Csa03g00583 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Csa03g00583 817 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
Csa03g00583 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 814 - -
Csa03g00583 817 Pfam PAN-like domain 343 408 IPR003609 -
Csa03g00583 817 SUPERFAMILY Protein kinase-like (PK-like) 486 781 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00583 Csa-Chr3:5050849 Csa03g04114 Csa-Chr3:36054625 0 dispersed
Csa03g00583 Csa-Chr3:5050849 Csa03g00584 Csa-Chr3:5055622 0 tandem
Csa07g02183 Csa-Chr7:20620407 Csa03g00583 Csa-Chr3:5050849 1.97E-68 transposed
Csa01g01164 Csa-Chr1:7214977 Csa03g00583 Csa-Chr3:5050849 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77956 PF07714 PK_Tyr_Ser-Thr 3.10E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00583 - - csv:101210952 1654.03