Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00584 ATGGACTCTTTTTCTGCAACACTCCTTGCTTTTAACTTAGCCCTTCTTCTCTTCAGGTCTGCAGCAATCTCCGATTCCTTAACGGCTCAAAACCCATATCTCAGAGATGGCCTTAGTCTGGTCTCTACTAATGGAACTTTTGAATTGGGTTTCTTTAGTCCTGGACTTCCCAGTAACCGTTACTTGGGAATTTGGTACAAGAATCGCCGAGGTCCAACATCTGTTTGGGTTGCCAATAGGAAAACCCCCATTAGTGGTTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAATCTTACACTCTTCGGCCATAATTCCACTGTTGTTGTTTGGTCCGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGATGATGAAAATCCCCAAAACTATTCCTGGCAAAGCTTTGATTACCCTTCTGATACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGATATAACATTGAGAGAAGATTAGAGGCTTGGAACAATCTCAATGACCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATGAATATCCCGAGACTGTCATGTGGAAATGTTCCCGAAAGTACGTTAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAATTTTGTTTCAAATGAGAATGAGGTTTACTACCAAATCTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCGACTTACACGCGCATATTATACTTGTGGTCTGCAGCTGAAAGACGGTGGAGAGTTTACACTTCATTGCCAAGAGATTACTGTGATAATTATGCCCTGTGTGGCCCATATGGTTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCGCCTGATACTTGGAAAACTGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGCGGTGATGAAGTTGGGTTTGCACATCTCAACCAGATGAAGTTGCCAGATACAAAGCATACTTGGGTCAACAAAAGCATGAATCTTGAAGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCATGTATGGCTTATGCAAATACAAATATTAGCGGCAGTGGCAGTGGCAGTGGTTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCCGATGCAGGACAGGATTTATATGTCAGAATGCTGGCATCAGAACTAGTCATGCATAGGAAAGCACACAAGACTGGAAGATTGAATTCGAAAGTGAAGATTGCTTTGTTTGCAATTTCCGGTTTTGGTTTGGCTATCATCTTCTTCATAGGCGTATACATTTTCAGAAGGAGATCAACCATTAAAGATGGCCATGAGAAAATAGAAGCTCATCACCTGGAGCTTCCCTTGTTTGATTTATCCTTGATTAACAGTGCCACAGATAACTTCTCACTTAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATGTTGCAGTGAAAAGACTTTCACAGAGTTCTGGACAAGGAACGAATGAGTTTAAGAATGAAGTAATCCTGATTGCGAAACTGCAACATCGAAACCTTGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGATGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTAATAAAACACAGCGACAATTATTAAGCTGGTCAAATCGGTATCGCATTATTTGTGGAGTTGCTAGAGGACTCATGTATCTCCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTTGACATGGATATGAATCCAAAAATCTCTGATTTTGGACTGGCTAAAACTTGTGGTGGAGATCAAACGGGAGGACGAACATTAAGAGTGATTGGAACCTACGGATATATGGCACCAGAATATGCTTTTGATGGACAATTCTCAGTGAAATCTGATGCTTTTAGTTATGGCATTTTGTTGCTGGAGATCATTAGTGGGAAAAGAAGCAGAACTTTCTGCCATTTGAATGACCAAAACCTAATTGCATATGCATGGCGATTATGGAAAGAAGGAAATGTAGAAGAATTGCTCGATGATGCCATTCGAGAAACATGCAGCCTTTCGGAAGTGATAAGATGTATCAATATCAGTTTGTTATGTGTTCAACAACATCCTAATGATCGACCCACAATGTCATCGGTGGTTATGATGCTAGGCTGTGAAATTCCTTTGTCACAACCAAAACAACCCGGATTTTTCATAGAAAATGAAGGCATTGAAATGAAAAGATGCTCAAGTGAAGATAAATCAACGTCAACTAATGAATTGACTGTTACGCTCCCAGATCCAAGGTAA 2460 40.77 MDSFSATLLAFNLALLLFRSAAISDSLTAQNPYLRDGLSLVSTNGTFELGFFSPGLPSNRYLGIWYKNRRGPTSVWVANRKTPISGSSGVLVMNITTGNLTLFGHNSTVVVWSARLLRKVPNGVLQLLDTGNLVLRDRDDENPQNYSWQSFDYPSDTLLPGMKLGWDLRYNIERRLEAWNNLNDPSPGDLSWRMELHEYPETVMWKCSRKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNENEVYYQISVVNKSHSVMLVMNQSTYTRILYLWSAAERRWRVYTSLPRDYCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDTWKTGEFADGCERNKLMNCGDEVGFAHLNQMKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGSGCALWIGDLIDLKLIPDAGQDLYVRMLASELVMHRKAHKTGRLNSKVKIALFAISGFGLAIIFFIGVYIFRRRSTIKDGHEKIEAHHLELPLFDLSLINSATDNFSLNNKLGEGGFGPVYKGKLTNGQDVAVKRLSQSSGQGTNEFKNEVILIAKLQHRNLVKLLGCCIEGDEKMLVYEYMPNKSLDFFIFNKTQRQLLSWSNRYRIICGVARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTGGRTLRVIGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRTFCHLNDQNLIAYAWRLWKEGNVEELLDDAIRETCSLSEVIRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFIENEGIEMKRCSSEDKSTSTNELTVTLPDPR* 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5055622 5059362 - CsaV3_3G005840.1 Csa03g00584 521489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00584 819 CDD STKc_IRAK 509 773 - -
Csa03g00584 819 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Csa03g00584 819 Gene3D Transferase(Phosphotransferase) domain 1 579 779 - -
Csa03g00584 819 MobiDBLite consensus disorder prediction 799 819 - -
Csa03g00584 819 PIRSF SRK 1 819 IPR024171 GO:0004674
Csa03g00584 819 SUPERFAMILY Protein kinase-like (PK-like) 488 785 IPR011009 -
Csa03g00584 819 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Csa03g00584 819 Gene3D - 20 151 IPR036426 -
Csa03g00584 819 PANTHER - 24 816 - -
Csa03g00584 819 CDD B_lectin 33 154 IPR001480 -
Csa03g00584 819 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Csa03g00584 819 ProSiteProfiles Protein kinase domain profile. 503 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00584 819 Pfam D-mannose binding lectin 73 179 IPR001480 -
Csa03g00584 819 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Csa03g00584 819 MobiDBLite consensus disorder prediction 805 819 - -
Csa03g00584 819 Pfam Protein tyrosine and serine/threonine kinase 504 772 IPR001245 GO:0004672|GO:0006468
Csa03g00584 819 CDD PAN_AP_plant 340 423 - -
Csa03g00584 819 SMART ntp_6 343 424 IPR003609 -
Csa03g00584 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Csa03g00584 819 SMART serkin_6 503 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00584 819 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 816 - -
Csa03g00584 819 Pfam PAN-like domain 343 410 IPR003609 -
Csa03g00584 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Csa03g00584 819 SMART blect_4 31 154 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00584 Csa-Chr3:5055622 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa03g00583 Csa-Chr3:5050849 Csa03g00584 Csa-Chr3:5055622 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77957 PF07714 PK_Tyr_Ser-Thr 4.70E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00584 - - csv:101210952 1660.97