Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00593 ATGAAATCTCTGTTGGGGTTGGGGTTCCCCTTTTGCATTTATATTATTCCTCAATCCTCCACCTCTCTTAATAATTCCTTTTTTGTCACTTCTATCTTTAACACTCCAAAACTCACATTCTCACATCCAACAAAACAACAATATAACACCTCACTACCCTCCTCCATAACTCTCCCTTCATCCATGGCCACCACCTCCCTAACATCCGATGACGAAGAGCTAGACCACCAAGAATCAGAAGAAGAAGAACACTCCAACGCTGCGTTTTGTCAGAGCTTATACGGAGTTGCTTCAGTTCTCGACCCAACATCCAAATGGGTTCGAGAATGGAATTGGGTCTTCCTCCTCGTCTGTGCAGCGGGCCTGTTCGTCGACCCTTTGTTTCTCTACACGCTATCCATAAGCGAGTCGTGGATGTGCGTTTTTATTGACGGGTGGTTGGCCATCACCGTGACCGTCCTCCGCTGCATGGGCGATGCTTTGCACCTTTGGAATATGTGGCTTCAGCTCAAGACTGCTACAAAGTCATCCTTTGCTGGTAGCGGGGAGGGTGATGGGAGGGGTGAAAATAGACGGCTTTGCGATAGTAGCCCACGCGCCGTCGCTCTCCGGTATTTGAAGTCCAAGAAAGGCTTCTTTTTTGATCTCTTTGTCATTCTTCCTTTTCCTCAGGTTGTATTATGGATAGTAATTCCTAGAATAATGAAAGAAGGATTAGTGACATCGGTGATGACAGTCTTATTGATAGTTTTTTTGTTTCAATATTTACCAAAATTGTACCATTCTGTTTGCTTACTACGACGTCTCCAAAACCTTTCTGGTTACATCTTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGTGCATGTTGGTATCTATTAGGGGTACAAAGAGCAGCAAAATGTCTAAAAGAGCAATGTAGATCAGCAACAACCAACAGCTGTGGGCTGAGGTTGTTATCATGCAAAGACCCAATCTTCTATGGACCAAACAATATGAGAATGGGAAGAGATGGAGGAAGGTTTGATTGGGCAAACAATAGGCTATCAAAATTCATGTGTTTAGATACTGCTGATAACTTTGATTATGGAGCTTATAAATGGACTGTTCAACTTGTTGTCAATCAAAGTCGGTTGGAGAAAATCCTTTTCCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAATTTGGAAAGCACAACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTTCTCACCAGTGGACTCTTATTGGTCACCATGTTGATTGGAAATATCAAGAAGTCAGCTGGTTCTTAG 1341 43.55 MKSLLGLGFPFCIYIIPQSSTSLNNSFFVTSIFNTPKLTFSHPTKQQYNTSLPSSITLPSSMATTSLTSDDEELDHQESEEEEHSNAAFCQSLYGVASVLDPTSKWVREWNWVFLLVCAAGLFVDPLFLYTLSISESWMCVFIDGWLAITVTVLRCMGDALHLWNMWLQLKTATKSSFAGSGEGDGRGENRRLCDSSPRAVALRYLKSKKGFFFDLFVILPFPQVVLWIVIPRIMKEGLVTSVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRSATTNSCGLRLLSCKDPIFYGPNNMRMGRDGGRFDWANNRLSKFMCLDTADNFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKKSAGS* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5111379 5117032 - CsaV3_3G005930.1 Csa03g00593 521498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00593 446 SUPERFAMILY Voltage-gated potassium channels 101 440 - -
Csa03g00593 446 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 68 441 - -
Csa03g00593 446 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 441 - -
Csa03g00593 446 Pfam Ion transport protein 110 441 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00593 Csa-Chr3:5111379 Csa05g03020 Csa-Chr5:30422601 1.31E-98 dispersed
Csa03g00593 Csa-Chr3:5111379 Csa06g01202 Csa-Chr6:10197240 2.12E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00593 K05391 - csv:101207531 761.14