Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00607 ATGGCGTTCCCTTTGTCTTCCCCCGTCGTCTCTCGCCGCTTTTCTCTCTCATCTCCCCTTCACATTACCAAACACACATTTCTTCATTCCAATTCCATTTTTCGATTTACCCATTCCTCCCGAACCTCGGTTCTCCCCAAACTCTCTTCCAACTCCCATAACCACTCTTCACTGGGACTAGAGGACCAGCATAACTTTCTCCAACAGTTATGCATTTCACCTTTTGAACTTGGAAAGAGGGAAATTAGGAAATTGATTGCTGTGCTCCTGATATGTATTCAAATTTCTTCCCCACTGCCCCTGCTGAATTGGGACTTTCAATCTATTCACCCTGCAATGGCAGTACTCTATTCGCCAGACACCAAGGTTCCAAGGACAGGAGAACTTGCATTAAGGAGAGCAATTCCTGCAAACACAAGCATGAAGGCAATACAGGACTCTTTAGAAGAGATATCATATTTGCTAAGGATTCCACAAAGAAAACCTTATGGAACCATGGAGGGTAATGTGAAGAAAGCTCTCAAGCTGGCAGTTGATGAGAAGGACTTGATCTTAGGAAGTATACCATCAGAGTCGAAGGAAAAAGGTTTAGCAATATACACAACTCTAATTGAAGGCAAGGGTGGACTGCAAACTCTCCTCCAAAGCATTAAGGATAATGACCCTGATAAAGTATCTGTAGGACTTGCATCATCACTTGATACTGTTGCAGAGTTGGAGTTGTTACAGGCTCCTGGATTGTCATTTTTATTGCCTGCTCAATACTCGAAGTATCCAAGGTTGACAGGGAGAGGAATCGTTGAATTTACCATTCAGAAAGGAGATGGTTCATCTTTTTCCCCACAAGCAGGTGGTGAATCTAGCAGTACAGCCACAATTCAGGTTGTTGTGGATGGATACTCAGCACCACTCACTGCAGGGAATTTTGCAAAACTGGTAATTGATGGAGCTTATGATGGATCAAAACTCAGCTCTACTAGTCAAGCTATTCTTTCTGAAAATAGTCAGGATAAGAATAAAGGCTATAACATTCCCTTGGAAATAAAGCCATCAGGACAATTCGAACCCTTATACCGAACAACCCTCAGTGTGCAGGATGGAGAATTGCCGGTTTTACCTCTGTCTGTGTATGGAGCAGTTGCAATGGCACATAACGAAGATTCAGAGGAATATTCTTCACCACATCAATTCTTCTTCTATCTGTATGATAAAAGAAATTCTGGCTTGGGAGGACTATCCTTTGATGAAGGGCAGTTTTCAGTTTTTGGATACACAACCGTTGGAAGAGACATACTTCCTCAGATCAAAACTGGAGACATAATTCGATCTGCGAAACTTGTCGAAGGTCAAGATCGCCTCGTTCTACCAAATGAGAATTGA 1380 42.54 MAFPLSSPVVSRRFSLSSPLHITKHTFLHSNSIFRFTHSSRTSVLPKLSSNSHNHSSLGLEDQHNFLQQLCISPFELGKREIRKLIAVLLICIQISSPLPLLNWDFQSIHPAMAVLYSPDTKVPRTGELALRRAIPANTSMKAIQDSLEEISYLLRIPQRKPYGTMEGNVKKALKLAVDEKDLILGSIPSESKEKGLAIYTTLIEGKGGLQTLLQSIKDNDPDKVSVGLASSLDTVAELELLQAPGLSFLLPAQYSKYPRLTGRGIVEFTIQKGDGSSFSPQAGGESSSTATIQVVVDGYSAPLTAGNFAKLVIDGAYDGSKLSSTSQAILSENSQDKNKGYNIPLEIKPSGQFEPLYRTTLSVQDGELPVLPLSVYGAVAMAHNEDSEEYSSPHQFFFYLYDKRNSGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDIIRSAKLVEGQDRLVLPNEN* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5223603 5229643 + CsaV3_3G006070.1 Csa03g00607 521512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00607 459 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 278 436 IPR002130 GO:0000413|GO:0003755
Csa03g00607 459 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP37, CHLOROPLASTIC 1 459 IPR044259 -
Csa03g00607 459 Gene3D - 137 242 IPR023222 -
Csa03g00607 459 Gene3D - 268 451 IPR029000 -
Csa03g00607 459 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 290 440 IPR002130 GO:0000413|GO:0003755
Csa03g00607 459 SUPERFAMILY Cyclophilin-like 292 443 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00607 - - - csv:101205375 896.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00607 Csa-Chr3:5223603 Csa03g03931 Csa-Chr3:34426186 1.24E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g274 . . . . . . . Bma13g00966 . . . . . . . . . . . . . . . . Cla10g00621 Cam10g0614 Cec10g0642 Cco10g0617 Clacu10g0644 Cmu10g1462 Cre10g0855 . . Cone14ag1081 Cone15ag1072 . Csa03g00607 . . . . . Bda12g00859 . . . . . . . . . . Car16g00809 . . . . . . . . . . . . . . . . Lsi05g00699 . Chy06g01716 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007260 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00607 Csa_Chr03 FPKM 0.0 0.0 0.195748 0.0 0.0 0.0 0.0 0.232704 0.51394 0.270738