Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00619 ATGGATCGGATTTTAAAGGCCGCAAGAGCATCCGGCTCTCTTAATCTTTCCAATCGCTCTCTCAGTGATGTGCCAAGTGAGGTTTATCGAAGCTTGGATGCAGTTCAGGCGGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTGCTGTATTAAATGTTAGTCACAACAAACTTTCTGAACTTCCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCATTAATGAGAATACCTGATGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTCAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCGGATCTAAAGGCATCAAACAACTCCATTTCCAGCTTGCCTGTTGAACTTGCGAACTGCTCAAAATTGACGAAGCTTGATATGGAGGGGAACAAACTAAAGGTGATATCCAAAAATTTGATTGCATCATGGACTCTGCTCACTGAACTTAATGCGTCGAAGAATTTGCTTAATGAGTTACCTGAGAATATTGGTAGCCTATTACGCCTCATTCGTTTAAATGTATTCCAAAACAAAATTTCATCAATTCCACCTTCAATAAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTAAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGTTGAAAGAGTATCCAGTTGAGGCATGCAAGTTACATCTCTTGGTCCTAGACCTTTCAAACAATTCATTGAGTGGACTGCCCCCAGAAATAGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACCCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAGGTTTCTTCGAAGTAGACTTCCTGAAAATGAAGGGCCTGAGGCTAGTAGCACTCAGAGAGGGGATGTAATAACTATGGCAGCGAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCTTCCAGGAGCTACCAGTTGAACTTTCTTCATGCACTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGACGCTACCTAATCTCACGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAGGCAGTCTCCAAGCTACAGGTTCTAGATCTTAGTGGTAATATAGCTTGCTTACCTGAGCACCCAACATTTTCCAGCTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGCTACATGAAGTTCCATCATCTATATTGGGCTTAAAGCACATGCGGATACTAGATTTGAGTCAAAATTCAATTCAATTAGTGCCAGAGGAATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGATAATAACATTTCACTGCTCCCTCCCCAGCTGAGCTTGCTTGAACCCAGCCTACAGGTACTTAGACTGGATGGAAATCCGCTAAGAAGCATTAGGAGGGCTATCTTGGAGAAAGGAACCAAAGCAATTTTAGCATATTTGAAGGATAAATTGGCTGAGTGA 1752 42.64 MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFDCSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLIASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWPGAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQELYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNISLLPPQLSLLEPSLQVLRLDGNPLRSIRRAILEKGTKAILAYLKDKLAE* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5392437 5405882 - CsaV3_3G006190.1 Csa03g00619 521524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00619 583 Gene3D Ribonuclease Inhibitor 5 122 IPR032675 -
Csa03g00619 583 Gene3D Ribonuclease Inhibitor 467 580 IPR032675 -
Csa03g00619 583 SUPERFAMILY L domain-like 361 562 - -
Csa03g00619 583 SUPERFAMILY L domain-like 41 317 - -
Csa03g00619 583 Gene3D Ribonuclease Inhibitor 123 275 IPR032675 -
Csa03g00619 583 Gene3D Ribonuclease Inhibitor 351 466 IPR032675 -
Csa03g00619 583 PRINTS Leucine-rich repeat signature 277 290 - -
Csa03g00619 583 PRINTS Leucine-rich repeat signature 521 534 - -
Csa03g00619 583 PANTHER LRR RECEPTOR-LIKE KINASE 14 131 - -
Csa03g00619 583 PANTHER LRR RECEPTOR-LIKE KINASE 216 582 - -
Csa03g00619 583 PANTHER LRR RECEPTOR-LIKE KINASE 136 227 - -
Csa03g00619 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 216 582 - -
Csa03g00619 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 131 - -
Csa03g00619 583 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 136 227 - -
Csa03g00619 583 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Csa03g00619 583 ProSiteProfiles Leucine-rich repeat profile. 429 450 IPR001611 GO:0005515
Csa03g00619 583 SMART LRR_typ_2 297 320 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 404 426 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 546 568 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 114 136 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 276 296 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 381 403 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 67 88 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 475 497 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 90 113 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 159 182 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 427 450 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 252 275 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 521 544 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 45 66 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 498 520 IPR003591 -
Csa03g00619 583 SMART LRR_typ_2 206 229 IPR003591 -
Csa03g00619 583 Gene3D Ribonuclease Inhibitor 276 330 IPR032675 -
Csa03g00619 583 Pfam Leucine rich repeat 477 534 IPR001611 GO:0005515
Csa03g00619 583 Pfam Leucine rich repeat 254 310 IPR001611 GO:0005515
Csa03g00619 583 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Csa03g00619 583 Pfam Leucine rich repeat 405 462 IPR001611 GO:0005515
Csa03g00619 583 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Csa03g00619 583 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Csa03g00619 583 SMART LRR_bac_2 159 178 - -
Csa03g00619 583 SMART LRR_bac_2 427 446 - -
Csa03g00619 583 SMART LRR_bac_2 67 86 - -
Csa03g00619 583 SMART LRR_bac_2 136 155 - -
Csa03g00619 583 SMART LRR_bac_2 521 540 - -
Csa03g00619 583 SMART LRR_bac_2 380 399 - -
Csa03g00619 583 SMART LRR_bac_2 185 202 - -
Csa03g00619 583 SMART LRR_bac_2 90 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00619 - - - csv:101203285 1075.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00619 Csa-Chr3:5392437 Csa03g02633 Csa-Chr3:24824322 7.36E-11 dispersed
Csa03g00619 Csa-Chr3:5392437 Csa03g01130 Csa-Chr3:8912410 5.76E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00619 Csa_Chr03 FPKM 17.452477 18.824518 10.036946 10.001155 6.083893 6.085166 6.932602 20.384151 21.879873 22.709368