Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00624 ATGGCCGCTGCCTCGGCAATGTTCAAAATCTTGAGCAGGTCTTCTTCAGGTTGCACGAGAACGCTGAGACCAGAAACAGATGCATTCTGTTTTGTGGCGTTGAGATTATACAGTACGAGACGAAGCTGCGATCGAAGAAACCTCTATGCGAGGATTAGTCCTCTCGGTGATCCTGAGTGTACTGTAGTTCCGGTTCTCAATCAATGGATTGAGGAAGGCAGGAACATCAAGGACTTTGAGCTCCGAAGAATCGTTCGTGACCTTCGCACTTGCCGGCGGTATCGCCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCATCCAGCTCGATCTGATTGGCCAAGTTCGGGGATTGGATTCTGCAGAGAAGTATTTTGGGAGTGTTTCCAACCAAAAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTATAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTCTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAACACTGGCCAGGCCGATAAAGTTCCAAATGTACTTTCCGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAGGTCTGATGTAATCAGTATGGAAAACGTTTTGAAAGAAATGGAGGGTCAAACTCACATATCCATGGATTGGACTACTTATTCAATGGTTGCCGGTTTTTTCATAAAAGCTGGTATGCATGACAAAGCAATGAATTATCTTCGGAAATGTGAGGACAAGGTTGATGAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACACCAATCTGGGACATAAGAATGAAGTAATGAGATTGTGGGCTCTTCTGAAGAAGGGTAAGAAGCAACTCAATAGGGATTATATAACCATGTTGGGTTCTTTGGTAAAGTTGGAGTTGCTCGAGGAAGCTGAGAATCTGGTCATGGAATGGGAGTCATCTTGCCAATGTTATGATTTTCGAGTACCGAATGTCGTTCTTATTGGGTATTCGCAGAAGGGTTTAATTGAGAAAGCTGAAAAGATGCTTCGAAACATCATCGTAAATGGGATGATCCCATCACCAAATAGTTGGGGCATTATTGCATCTGGGTACTTGGAAAAGCAGAACCTAGAGAAAGCTTTTGAGTGCATGAAAGAAGCGCTTGCTGTGAAAGGGCAAAATAAAGTTTGGAGGCCCAAACCTAATGTTTTATCAAGCATCCTGAGATGGCTATCTGAAAATAGAAGATATGAAGAGATGAAAGAGTTTATGAGCTCATTGAAGACTGTACCTTCCATGGATGAAAAACTAAATAATGCCTTGGATGAGCTTTTAGAAATCATGGCAAACGACGATGGAATATCAAAGGACGAATTAGAGGTTTGA 1476 42.28 MAAASAMFKILSRSSSGCTRTLRPETDAFCFVALRLYSTRRSCDRRNLYARISPLGDPECTVVPVLNQWIEEGRNIKDFELRRIVRDLRTCRRYRQALEVSEWMCSKGLFSLTTRDFAIQLDLIGQVRGLDSAEKYFGSVSNQKEIGKLYGALLNCYVREGLIDKSLAHMQKMKEMGLASSPLCYNDIMCLYLNTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGARSDVISMENVLKEMEGQTHISMDWTTYSMVAGFFIKAGMHDKAMNYLRKCEDKVDEDALGFNHLISHYTNLGHKNEVMRLWALLKKGKKQLNRDYITMLGSLVKLELLEEAENLVMEWESSCQCYDFRVPNVVLIGYSQKGLIEKAEKMLRNIIVNGMIPSPNSWGIIASGYLEKQNLEKAFECMKEALAVKGQNKVWRPKPNVLSSILRWLSENRRYEEMKEFMSSLKTVPSMDEKLNNALDELLEIMANDDGISKDELEV* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5424877 5428451 - CsaV3_3G006240.1 Csa03g00624 521529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00624 491 SUPERFAMILY TPR-like 156 426 IPR011990 GO:0005515
Csa03g00624 491 Pfam PPR repeat family 184 226 IPR002885 -
Csa03g00624 491 Pfam PPR repeat 360 386 IPR002885 -
Csa03g00624 491 Pfam PPR repeat 150 178 IPR002885 -
Csa03g00624 491 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 33 473 - -
Csa03g00624 491 Gene3D Tetratricopeptide repeat domain 232 318 IPR011990 GO:0005515
Csa03g00624 491 Gene3D Tetratricopeptide repeat domain 71 231 IPR011990 GO:0005515
Csa03g00624 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Csa03g00624 491 Gene3D Tetratricopeptide repeat domain 323 481 IPR011990 GO:0005515
Csa03g00624 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Csa03g00624 491 PANTHER OS12G0527900 PROTEIN 33 473 - -
Csa03g00624 491 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00624 - - - csv:101204020 988.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00624 Csa-Chr3:5424877 Csa07g00437 Csa-Chr7:3147794 9.51E-101 dispersed
Csa01g01221 Csa-Chr1:7587727 Csa03g00624 Csa-Chr3:5424877 7.93E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00624 Csa_Chr03 FPKM 1.332696 1.423041 0.973669 1.034788 5.637662 4.147499 5.152669 0.767617 0.559042 1.095064