Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00625 ATGATTTATGAGAATAATAATGGGTTTGTTTGGTTCATTTTCATGGTGATTGGTTTAGGTGAGTTCTTTGTCCATGGGGATAATTCTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTACGACAACACGTTTCATGCCGGGTTCGGAATAAACACGGCAGCTGTGAGCGGCGTACTTTTCAGAAGGGGAGAGGCTTGCGGCGCTTGTTTTCTAGTAATTTGCAACTATAACGCAGACCCCAAGTGGTGTCTCCGCCGCCGCGCCGTCACCGTCACTGCCACAAACTTCTGCCCGTCCAATAACAACGGGGGCTGGTGCGACCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACTATTGCTCGTCAAGGCAACGAAGGGATTGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAAAAGAAAAGGAGGTGTCCGATTCACGTTGAGAGGACAATCAAACTTCAACATGGTGATGATATCAAATGTGGGAGGAAGTGGCGATGTGAAGGCTGCATGGGTAAAAGGTTCGAAGATGAGGATGTGGACGCCCATGCACCGAAATTGGGGAGCAAATTGGCAAGCTAACGTCGACCTTCGAAATCAAAGAATGTCATTTAAGCTCACTTTACTCGATGGAAGAACATTGGAGTTTGTCAACGTTGTTCCTTCCTCGTGGAGATTTGGACAAACATTTTCGTCCATGGTTCAATTCTCCTAG 765 47.06 MIYENNNGFVWFIFMVIGLGEFFVHGDNSWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGVLFRRGEACGACFLVICNYNADPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCKRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSKMRMWTPMHRNWGANWQANVDLRNQRMSFKLTLLDGRTLEFVNVVPSSWRFGQTFSSMVQFS* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5430736 5433519 - CsaV3_3G006250.1 Csa03g00625 521530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00625 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 159 IPR007112 -
Csa03g00625 254 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Csa03g00625 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Csa03g00625 254 PANTHER EXPANSIN-A15 8 254 IPR002963 GO:0009664
Csa03g00625 254 PANTHER EXPANSIN-A12 8 254 - -
Csa03g00625 254 SUPERFAMILY Barwin-like endoglucanases 29 177 IPR036908 -
Csa03g00625 254 SMART dpbb_1 65 149 IPR007112 -
Csa03g00625 254 Pfam Lytic transglycolase 65 149 IPR009009 -
Csa03g00625 254 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
Csa03g00625 254 Gene3D - 21 155 IPR036908 -
Csa03g00625 254 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Csa03g00625 254 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Csa03g00625 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Csa03g00625 254 Gene3D - 159 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00625 Csa-Chr3:5430736 Csa02g01712 Csa-Chr2:16862254 1.34E-95 dispersed
Csa06g01104 Csa-Chr6:9119830 Csa03g00625 Csa-Chr3:5430736 2.92E-36 dispersed
Csa03g00625 Csa-Chr3:5430736 Csa05g00892 Csa-Chr5:6920508 8.93E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00625 - - csv:101204263 544.273