Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00636 ATGCCTCCGATTTCTCTGCAACTCACCCCCTTCATTTCTCCACTAATCCACCGCCCTAATCTCCGCCTTCACCGACCCCCAATTCCCCCTCTCTCGCCGCCCAGATCACTCACCGTCCGATCGGTTCAACAAAATAACGAACACCCATCTCCCTCGCCACCGCCAAAACCCACTGGTTTGGACGATTTTCTTTCCACGGCGGCTAGTCTCTACCCTCTCTATGTGACGGCAGGCGGGATTGTTGCTTGCCTCGAACCCTCGACCTTCTCGTGGTTTGTGCAGAGAGGGCCGAGTTCCTATAGCTTATCTCTTGGTTTGATAATGTTGGCCATGGGGCTTACTCTAGAGATCAAGGATTTATTTAATTTGTTCATGCAAAGACCTCTTTCGATATTGTTTGGATGTGTAGCTCAGTACACGATTATGCCAGCTTCTGCAGTGCTGATCGGAAAACTTTTGGGACTTTCCCAGTCCCTTTTGTTCGGTTTGGTCTTGCTTGGATGTTGTCCTGGAGGATCTGCTTCCAATGTGGTAACCTTAATTGCTCAAGGCGACGTTCCTTTGTCTATTGTAATGACAGTATGCACAACTTTAGGAGCCGTAATTTTCACTCCTTTTCTGACAAAGTTTCTAGTAGGAGCTTATATTCCAGTCGACGCTGCACAGCTTTCTCTCAGCACCCTTCAGGTGGTGGTAGCTCCTATCCTGTTAGGTTCTTGCTTGCAAAAGGCATTTCCTTCCCTGGTGAAATTGGTGTTACCATTTGCACCACTTGTTGCTGTTTTAACTTCCTCGCTGCTTGCTAGCAGTGTCTTCTCAGAGAATGTCATTCGTATCAAATCGTCAATGGTTAGTGCCACATTGGCCTCTGATGCATCTCTATGGACAGTCCTTAAAAGTATATTATCAGGAGAGCTGGGAGTAGTAATACTTTCGGTGTTTTGTTTACACTTTGCTGGTTTCTTCGTCGGGTATATAGCAGCTGCTATCTGTGGGTTTCGAGAACGAGAACGAAGAACTATATCCATGCAGGTTGGGATGCAGAATTCATCACTGGGAGTTGTTTTGGCAGCCTCACATTTTAGTTCAGCAATGGTGGCATTGCCTCCAGCAATTTCAGCTGTGATAATGAACATGATGGGGAGCACTCTTGGATTTTGTTGGAAATATATTCAACCTTCTGATGAAGTGAAAACCAGTGTTGTTGCCAAGTGA 1215 46.34 MPPISLQLTPFISPLIHRPNLRLHRPPIPPLSPPRSLTVRSVQQNNEHPSPSPPPKPTGLDDFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTLEIKDLFNLFMQRPLSILFGCVAQYTIMPASAVLIGKLLGLSQSLLFGLVLLGCCPGGSASNVVTLIAQGDVPLSIVMTVCTTLGAVIFTPFLTKFLVGAYIPVDAAQLSLSTLQVVVAPILLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRIKSSMVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVVAK* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5491495 5495848 - CsaV3_3G006360.1 Csa03g00636 521541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00636 404 Pfam Sodium Bile acid symporter family 102 280 IPR002657 GO:0016020
Csa03g00636 404 PANTHER SODIUM-BILE ACID COTRANSPORTER 17 395 IPR004710 -
Csa03g00636 404 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS2, CHLOROPLASTIC-RELATED 17 395 - -
Csa03g00636 404 MobiDBLite consensus disorder prediction 26 59 - -
Csa03g00636 404 Gene3D - 58 390 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00636 K03453 TC.BASS; bile acid:Na+ symporter, BASS family - csv:101206254 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00636 Csa-Chr3:5491495 Csa04g02252 Csa-Chr4:23131403 2.10E-68 dispersed
Csa03g00636 Csa-Chr3:5491495 Csa03g00637 Csa-Chr3:5497351 2.11E-172 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1152 Blo02g01201 . . Bda08g00412 . . . . . . . . . . . . Cpe14g00677 . . . . . . . . . . . . . . . . . . . . . Cme06g02135 . . . . . . Bma05g00925 . . . Cmo16g00841 . . . . . . . . . . . . . Cla10g00662 Cam10g0658 Cec10g0683 Cco10g0653 Clacu10g0680 Cmu10g1504 Cre10g0885 . Csa03g00636 Chy06g01687 .
Vvi19g166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00636 . . . . . . . . . . Sed07g1851 . . . . . . . . Bhi11g00780 Tan01g1553 Cmetu06g2423 . . Mch10g0653 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003304 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 1 2 2 1 1 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00636 Csa_Chr03 FPKM 0.555972 0.416681 0.757079 0.9472 1.23914 1.622086 0.861948 5.128244 4.885126 4.887282