Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00638 | ATGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTTCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCTGACTCTTCTACACTAAGCACTTGGACAGCCTCAAACTTCAGCTCAGTTTGTTCATGGGTCGGGATTCAGTGTTCTCACGGACGAGTTGTTTCAGTCAACTTGACAGATTTGAGTCTTGGTGGCTTTGTTTCACCGTTGATTTCAAATCTTGACCAACTTACTGAGTTGTCCGTCGCAGGAAATAACTTTTCTGGTGGCATTGAAGTCATGAATTTGCGTTACCTTCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCGAACTTGGAGGTGTTGGATGCCTATAACAACAACTTCACTGCTCTACTCCCCACTGAGATTTTGAATTTACAGAACCTCAAATACTTAGACCTTGGAGGTAACTTTTTTCATGGAAAAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCAATATCTTTTTCTTGCAGGAAATGATTTGGTTGGGAAAATCCCAGGAGCGTTGGGAAATCTCACAAATTTGAGAGAAATTTACTTGGGCCATTACAATGTTTTTGAAGGGGGACTTCCACCCGAACTTGGGAAATTGGCCAATTTGGTTCTCATGGACATTGCAGACTGTGGTTTGGACGGTCAAATTCCTCATGAACTTGGGAATTTGAAGGCCTTGGAGACTCTATATATGCATACAAACCTATTCTCAGGTTCGATTCCTAAGCAGTTAGGCAATCTGACAAACTTGGTCAATTTGGATCTCTCCAACAATGCACTCACGGGAGAAATCCCATCTGAGTTTGTTGAGCTCAAACAGCTCAACCTTTACAAGCTCTTCATGAACAAACTTCATGGATCTATCCCAGACTACATAGCAGATTTGCCAAACTTGGAGACGTTGGAACTGTGGATGAACAACTTCACCAGCACAATCCCTAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACAAACAAGCTCACAGGTACAATACCTGAGGGCTTGTGTTCATCAAACCAGCTGAGAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGTTTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTAGGGCAAAACTATCTGAACGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCTGGAACACTTTCAGAAAACTGGGAGAGTTCATCAATACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATTCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTTAGCAGAAACTCGCTTTCAGGTGAAATTCCACCTGAAATTGGGAATTGTATTCATCTCACTTACCTTGATTTGAGCAGAAACAACCTCTCTGGCCCAATTCCTCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCAAGAAATCACCTAAATCAATCCCTACCAAAATCATTAGGAGCAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCCGGAAAGCTACCGGAATCCGGACTTGCGTTCTTCAATGCTTCATCCTTCGCCGGAAATCCTCAGCTCTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAACAACAACAAAGTCGGGAAAAACTCCAACGTATTTCAAGCTAATATTCGCCCTCGGCCTATTAATTTGCTCTCTAGTGTTCGCCATAGCGGCAGTAGTGAAAGCGAAATCATTCAAACGAAATGGATCAAGTTCATGGAAAATGACCTCATTCCAAAAGCTTGAATTCACCGTCTTCGACGTCTTGGAGTGCGTGAAAGACGGCAACGTGATCGGACGAGGCGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGTCACGATCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATTGTGAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTCGTGTATGAATACATGAGGAATGGAAGCTTAGGCGAAGCACTCCATGGCAAAAAAGCCTCGTTCCTTGGATGGAATTTGAGATACAAAATCGCGATTGAAGCCGCCAAAGGTCTGTGCTACCTCCACCACGATTGCTCTCCACTAATCGTTCATCGAGACGTGAAATCGAACAACATCCTCTTGAATTCAAACTTCGAAGCTCACGTCGCGGATTTCGGATTGGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATATACATTGAAAGTCGATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTATTAGAGCTTTTGACGGGACGTCGACCAGTTGGAGATTTTGGGGATGGAGTGGTTGATATAGCACAATGGTGCAAAAGAGCTCTAACAGATGGCGAGAATGAAAATGACATTATTTGCGTAGCTGACAAAAGGGTAGGAATGATACCAAAAGAGGAAGCAAAACACTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAACAGTGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGCTGAGTTTCCTCACCAATCTCCCACTTGTTTCCAATCTTCCTCCTCCTCTTCTCCCTGTCAAAAATTGAAGACCGACGAAAAGGAAAGAGAACGTCAATCAAAGTCCAAACCAGATCATTTAGTTTAA | 3000 | 43.5 | MFFLVFTFFSLLGFSSSHSLVSDFHVLLALKQGFEFSDSSTLSTWTASNFSSVCSWVGIQCSHGRVVSVNLTDLSLGGFVSPLISNLDQLTELSVAGNNFSGGIEVMNLRYLRFLNISNNQFTGTLDWNFSSLPNLEVLDAYNNNFTALLPTEILNLQNLKYLDLGGNFFHGKIPESYGSLEGLQYLFLAGNDLVGKIPGALGNLTNLREIYLGHYNVFEGGLPPELGKLANLVLMDIADCGLDGQIPHELGNLKALETLYMHTNLFSGSIPKQLGNLTNLVNLDLSNNALTGEIPSEFVELKQLNLYKLFMNKLHGSIPDYIADLPNLETLELWMNNFTSTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLRILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSIPIKLGQLNLSNNLLSGTLPSSLSNLSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSLGAMKSLTIADFSFNDFSGKLPESGLAFFNASSFAGNPQLCGSLLNNPCNFATTTTTKSGKTPTYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLEFTVFDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKRALTDGENENDIICVADKRVGMIPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFPHQSPTCFQSSSSSSPCQKLKTDEKERERQSKSKPDHLV* | 1000 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5527147 | 5531629 | + | CsaV3_3G006380.1 | Csa03g00638 | 521543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00638 | 999 | Gene3D | Ribonuclease Inhibitor | 325 | 617 | IPR032675 | - | |
Csa03g00638 | 999 | Pfam | Leucine rich repeat N-terminal domain | 22 | 62 | IPR013210 | - | |
Csa03g00638 | 999 | Gene3D | Transferase(Phosphotransferase) domain 1 | 761 | 980 | - | - | |
Csa03g00638 | 999 | PRINTS | Leucine-rich repeat signature | 353 | 366 | - | - | |
Csa03g00638 | 999 | PRINTS | Leucine-rich repeat signature | 497 | 510 | - | - | |
Csa03g00638 | 999 | ProSiteProfiles | Protein kinase domain profile. | 684 | 960 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00638 | 999 | Pfam | Protein tyrosine and serine/threonine kinase | 687 | 957 | IPR001245 | GO:0004672|GO:0006468 | |
Csa03g00638 | 999 | MobiDBLite | consensus disorder prediction | 979 | 999 | - | - | |
Csa03g00638 | 999 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 | 13 | 966 | - | - | |
Csa03g00638 | 999 | Gene3D | Ribonuclease Inhibitor | 218 | 322 | IPR032675 | - | |
Csa03g00638 | 999 | SUPERFAMILY | RNI-like | 69 | 388 | - | - | |
Csa03g00638 | 999 | Pfam | Leucine rich repeat | 111 | 168 | IPR001611 | GO:0005515 | |
Csa03g00638 | 999 | Gene3D | Ribonuclease Inhibitor | 22 | 128 | IPR032675 | - | |
Csa03g00638 | 999 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 805 | 817 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g00638 | 999 | PANTHER | UNNAMED PRODUCT | 13 | 966 | - | - | |
Csa03g00638 | 999 | Pfam | Leucine Rich Repeat | 523 | 544 | IPR001611 | GO:0005515 | |
Csa03g00638 | 999 | SUPERFAMILY | Protein kinase-like (PK-like) | 668 | 957 | IPR011009 | - | |
Csa03g00638 | 999 | SMART | serkin_6 | 684 | 957 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00638 | 999 | Gene3D | Phosphorylase Kinase; domain 1 | 648 | 760 | - | - | |
Csa03g00638 | 999 | SUPERFAMILY | L domain-like | 312 | 606 | - | - | |
Csa03g00638 | 999 | Gene3D | Ribonuclease Inhibitor | 129 | 217 | IPR032675 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 278 | 302 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 473 | 495 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 133 | 156 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 351 | 374 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 181 | 205 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 497 | 521 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 326 | 350 | IPR003591 | - | |
Csa03g00638 | 999 | SMART | LRR_typ_2 | 522 | 545 | IPR003591 | - | |
Csa03g00638 | 999 | MobiDBLite | consensus disorder prediction | 965 | 999 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00638 | Csa-Chr3:5527147 | Csa06g03067 | Csa-Chr6:26338997 | 0 | dispersed | |
Csa03g00638 | Csa-Chr3:5527147 | Csa06g03068 | Csa-Chr6:26350693 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77958 | PF07714 | PK_Tyr_Ser-Thr | 7.10E-44 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00638 | - | - | csv:101215633 | 1922.52 |