Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00638 ATGTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGCTTCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCTGACTCTTCTACACTAAGCACTTGGACAGCCTCAAACTTCAGCTCAGTTTGTTCATGGGTCGGGATTCAGTGTTCTCACGGACGAGTTGTTTCAGTCAACTTGACAGATTTGAGTCTTGGTGGCTTTGTTTCACCGTTGATTTCAAATCTTGACCAACTTACTGAGTTGTCCGTCGCAGGAAATAACTTTTCTGGTGGCATTGAAGTCATGAATTTGCGTTACCTTCGATTCCTTAACATCTCAAACAACCAGTTCACTGGGACTCTGGACTGGAACTTTTCGAGTCTGCCGAACTTGGAGGTGTTGGATGCCTATAACAACAACTTCACTGCTCTACTCCCCACTGAGATTTTGAATTTACAGAACCTCAAATACTTAGACCTTGGAGGTAACTTTTTTCATGGAAAAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCAATATCTTTTTCTTGCAGGAAATGATTTGGTTGGGAAAATCCCAGGAGCGTTGGGAAATCTCACAAATTTGAGAGAAATTTACTTGGGCCATTACAATGTTTTTGAAGGGGGACTTCCACCCGAACTTGGGAAATTGGCCAATTTGGTTCTCATGGACATTGCAGACTGTGGTTTGGACGGTCAAATTCCTCATGAACTTGGGAATTTGAAGGCCTTGGAGACTCTATATATGCATACAAACCTATTCTCAGGTTCGATTCCTAAGCAGTTAGGCAATCTGACAAACTTGGTCAATTTGGATCTCTCCAACAATGCACTCACGGGAGAAATCCCATCTGAGTTTGTTGAGCTCAAACAGCTCAACCTTTACAAGCTCTTCATGAACAAACTTCATGGATCTATCCCAGACTACATAGCAGATTTGCCAAACTTGGAGACGTTGGAACTGTGGATGAACAACTTCACCAGCACAATCCCTAAGAATCTTGGCCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCAACAAACAAGCTCACAGGTACAATACCTGAGGGCTTGTGTTCATCAAACCAGCTGAGAATATTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGTTTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTAGGGCAAAACTATCTGAACGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGCTAAATTTAGCAGAGTTTCAGGACAATTACCTTTCTGGAACACTTTCAGAAAACTGGGAGAGTTCATCAATACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGAACTTTACCATCTTCACTTTCTAATTTGTCTTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATTCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTTAGCAGAAACTCGCTTTCAGGTGAAATTCCACCTGAAATTGGGAATTGTATTCATCTCACTTACCTTGATTTGAGCAGAAACAACCTCTCTGGCCCAATTCCTCCTGAAATTTCCAATGCACATATTCTCAATTACCTCAACTTGTCAAGAAATCACCTAAATCAATCCCTACCAAAATCATTAGGAGCAATGAAGAGCCTGACGATTGCTGATTTCTCCTTCAACGATTTCTCCGGAAAGCTACCGGAATCCGGACTTGCGTTCTTCAATGCTTCATCCTTCGCCGGAAATCCTCAGCTCTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACAACAACAACAAAGTCGGGAAAAACTCCAACGTATTTCAAGCTAATATTCGCCCTCGGCCTATTAATTTGCTCTCTAGTGTTCGCCATAGCGGCAGTAGTGAAAGCGAAATCATTCAAACGAAATGGATCAAGTTCATGGAAAATGACCTCATTCCAAAAGCTTGAATTCACCGTCTTCGACGTCTTGGAGTGCGTGAAAGACGGCAACGTGATCGGACGAGGCGGCGCCGGCATCGTCTACCACGGGAAAATGCCGAACGGAGTTGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGTCACGATCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATTGTGAGATTACTCGCATTCTGCTCCAATAAAGAGACAAACCTCCTCGTGTATGAATACATGAGGAATGGAAGCTTAGGCGAAGCACTCCATGGCAAAAAAGCCTCGTTCCTTGGATGGAATTTGAGATACAAAATCGCGATTGAAGCCGCCAAAGGTCTGTGCTACCTCCACCACGATTGCTCTCCACTAATCGTTCATCGAGACGTGAAATCGAACAACATCCTCTTGAATTCAAACTTCGAAGCTCACGTCGCGGATTTCGGATTGGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAATGCATGTCGGTGATCGCCGGATCTTACGGCTACATCGCTCCTGAATATGCATATACATTGAAAGTCGATGAGAAAAGTGATGTGTATAGTTTTGGAGTGGTGCTATTAGAGCTTTTGACGGGACGTCGACCAGTTGGAGATTTTGGGGATGGAGTGGTTGATATAGCACAATGGTGCAAAAGAGCTCTAACAGATGGCGAGAATGAAAATGACATTATTTGCGTAGCTGACAAAAGGGTAGGAATGATACCAAAAGAGGAAGCAAAACACTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAACAGTGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGCTGAGTTTCCTCACCAATCTCCCACTTGTTTCCAATCTTCCTCCTCCTCTTCTCCCTGTCAAAAATTGAAGACCGACGAAAAGGAAAGAGAACGTCAATCAAAGTCCAAACCAGATCATTTAGTTTAA 3000 43.5 MFFLVFTFFSLLGFSSSHSLVSDFHVLLALKQGFEFSDSSTLSTWTASNFSSVCSWVGIQCSHGRVVSVNLTDLSLGGFVSPLISNLDQLTELSVAGNNFSGGIEVMNLRYLRFLNISNNQFTGTLDWNFSSLPNLEVLDAYNNNFTALLPTEILNLQNLKYLDLGGNFFHGKIPESYGSLEGLQYLFLAGNDLVGKIPGALGNLTNLREIYLGHYNVFEGGLPPELGKLANLVLMDIADCGLDGQIPHELGNLKALETLYMHTNLFSGSIPKQLGNLTNLVNLDLSNNALTGEIPSEFVELKQLNLYKLFMNKLHGSIPDYIADLPNLETLELWMNNFTSTIPKNLGQNGRLQLLDLSTNKLTGTIPEGLCSSNQLRILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSIPIKLGQLNLSNNLLSGTLPSSLSNLSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNSLSGEIPPEIGNCIHLTYLDLSRNNLSGPIPPEISNAHILNYLNLSRNHLNQSLPKSLGAMKSLTIADFSFNDFSGKLPESGLAFFNASSFAGNPQLCGSLLNNPCNFATTTTTKSGKTPTYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLEFTVFDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGDGVVDIAQWCKRALTDGENENDIICVADKRVGMIPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFPHQSPTCFQSSSSSSPCQKLKTDEKERERQSKSKPDHLV* 1000
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5527147 5531629 + CsaV3_3G006380.1 Csa03g00638 521543
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00638 999 Gene3D Ribonuclease Inhibitor 325 617 IPR032675 -
Csa03g00638 999 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Csa03g00638 999 Gene3D Transferase(Phosphotransferase) domain 1 761 980 - -
Csa03g00638 999 PRINTS Leucine-rich repeat signature 353 366 - -
Csa03g00638 999 PRINTS Leucine-rich repeat signature 497 510 - -
Csa03g00638 999 ProSiteProfiles Protein kinase domain profile. 684 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00638 999 Pfam Protein tyrosine and serine/threonine kinase 687 957 IPR001245 GO:0004672|GO:0006468
Csa03g00638 999 MobiDBLite consensus disorder prediction 979 999 - -
Csa03g00638 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 13 966 - -
Csa03g00638 999 Gene3D Ribonuclease Inhibitor 218 322 IPR032675 -
Csa03g00638 999 SUPERFAMILY RNI-like 69 388 - -
Csa03g00638 999 Pfam Leucine rich repeat 111 168 IPR001611 GO:0005515
Csa03g00638 999 Gene3D Ribonuclease Inhibitor 22 128 IPR032675 -
Csa03g00638 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Csa03g00638 999 PANTHER UNNAMED PRODUCT 13 966 - -
Csa03g00638 999 Pfam Leucine Rich Repeat 523 544 IPR001611 GO:0005515
Csa03g00638 999 SUPERFAMILY Protein kinase-like (PK-like) 668 957 IPR011009 -
Csa03g00638 999 SMART serkin_6 684 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00638 999 Gene3D Phosphorylase Kinase; domain 1 648 760 - -
Csa03g00638 999 SUPERFAMILY L domain-like 312 606 - -
Csa03g00638 999 Gene3D Ribonuclease Inhibitor 129 217 IPR032675 -
Csa03g00638 999 SMART LRR_typ_2 278 302 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 473 495 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 133 156 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 351 374 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 181 205 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 497 521 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 326 350 IPR003591 -
Csa03g00638 999 SMART LRR_typ_2 522 545 IPR003591 -
Csa03g00638 999 MobiDBLite consensus disorder prediction 965 999 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00638 Csa-Chr3:5527147 Csa06g03067 Csa-Chr6:26338997 0 dispersed
Csa03g00638 Csa-Chr3:5527147 Csa06g03068 Csa-Chr6:26350693 0 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77958 PF07714 PK_Tyr_Ser-Thr 7.10E-44 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00638 - - csv:101215633 1922.52