Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00652 ATGGCTCTCGTCTTGCATTCTTGGAAGACTAACAAAAATGCTTACAAGGCTTTAATAGCTGCGGAGTACAATGGTGTCAAGGTTGATCTTTCCCAAGATTTTACCATGGGCGTGACCAACAAGAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTTCTGGAAACACCAGATGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGCTTGAAGGACAGTGGTTTATTTGGCTCTTCTTCCATTGATTGTGGACATGTTGAACAATGGATTGATTTTTCCACGTTTGAAATTGATATTCCTGTGTCAACTAAGTTGAGGCCTAGATTTGGATATGCTGCTTTCCATCCGGGTGTAGAGGAAACCGCTGATGCTGCTCTAAAACGATCTTTCGGTGCTTTGAACTCCTACCTTGCTTCAAACACATTCCTCGTTGGACACTCCGTGACACTAGCTGATATCATTCTGACATGCAATCTCTATTTGGGATTCAACTATATATTGACTAAAAGCTTTACTTCTGAGTTTCCCCACGTTGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCAAAAAGATAATGGGTGAGGTAAAGCAGACAGACGCCGTCCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAAGCGAAGGCTGAGCCCAAGAAACAAGAAGAGAAGCCTGCAGCACCTGCTGAGGAGGAGGCACCAAAGCCCAAGGCCAAAAATCCTCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGAGTGGAAATGTCTCTACTCGAACACCAAGTCTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGGTACTCCCTTTGGTTCTGTGACTACAAATACAACGACGAGAATACCGTTTCATTTGTGACATTGAACAAAGTTGGTGGATTCCTCCAGAGAATGGATATTGCTAGGAAGTACGCATTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCACAATTTGTGCTTGATGAGTGCTATGATATGGAGCTGTACGAGTGGAAGAAGGTGGATATCTCGGATGAAGCCCAGAAGGAGAGGGTGAGCCAAATGATTGAAGACCAGGAACCATTTGAGGGTGAAGCTCTCTTGGATGCCAAATGCTTCAAGTGA 1233 44.61 MALVLHSWKTNKNAYKALIAAEYNGVKVDLSQDFTMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSGLFGSSSIDCGHVEQWIDFSTFEIDIPVSTKLRPRFGYAAFHPGVEETADAALKRSFGALNSYLASNTFLVGHSVTLADIILTCNLYLGFNYILTKSFTSEFPHVERYFWTLVNQPNFKKIMGEVKQTDAVPPVKTPEEAAAAAKAKAEPKKQEEKPAAPAEEEAPKPKAKNPLDLLPPSSMILDEWKCLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDISDEAQKERVSQMIEDQEPFEGEALLDAKCFK* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5678932 5681941 - CsaV3_3G006520.1 Csa03g00652 521557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00652 410 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 250 410 IPR036433 GO:0003746|GO:0006414
Csa03g00652 410 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Csa03g00652 410 CDD GST_C_EF1Bgamma_like 89 209 - -
Csa03g00652 410 Gene3D - 79 212 - -
Csa03g00652 410 SFLD Main (cytGST) 4 189 - -
Csa03g00652 410 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 410 IPR044628 GO:0004364
Csa03g00652 410 Pfam Glutathione S-transferase, C-terminal domain 127 196 IPR004046 -
Csa03g00652 410 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Csa03g00652 410 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Csa03g00652 410 SUPERFAMILY eEF1-gamma domain 251 410 IPR036433 GO:0003746|GO:0006414
Csa03g00652 410 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
Csa03g00652 410 MobiDBLite consensus disorder prediction 222 250 - -
Csa03g00652 410 SUPERFAMILY Thioredoxin-like 2 78 IPR036249 -
Csa03g00652 410 SMART EF1G_2 249 357 IPR001662 GO:0003746|GO:0006414
Csa03g00652 410 Gene3D Glutaredoxin 1 74 - -
Csa03g00652 410 MobiDBLite consensus disorder prediction 209 253 - -
Csa03g00652 410 CDD GST_N_EF1Bgamma 3 77 - -
Csa03g00652 410 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 250 410 IPR001662 GO:0003746|GO:0006414
Csa03g00652 410 Pfam Elongation factor 1 gamma, conserved domain 249 357 IPR001662 GO:0003746|GO:0006414
Csa03g00652 410 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00652 Csa-Chr3:5678932 Csa07g01815 Csa-Chr7:18386564 1.66E-10 dispersed
Csa03g00652 Csa-Chr3:5678932 Csa03g00653 Csa-Chr3:5682858 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00652 K03233 - csv:101215571 763.451