Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00653 | ATGGCTCTGGTTCTGCATTCTTGGACTCCTAGCAAAAATGTTTACAAGGTTTTAATAGCTGCGGAATACAATGGTGTCAAAGTTGACCTTGCCCCAGACTTCACTATGGGTGTAAGCAATAAGAGTCCTGAATTTCTCAAAATGAATCCTATTGGGAAGGTTCCTCTTCTGCAAACACCCGATGGTCCTATCTTTGAGAGCAATGCTATAACCCGCTATGTTGCTCGCTTGAAGGACAGCATTTTATTTGGCTCTTCTCCAATTGATTATGGACATGTTGAACAATGGATCGATTTCTCTTCATTGGAAATTGATATTCACATTTCGACTATTCTGGCGCCTAGATTTGGATATGGTGTTTACCATGCTCCTGCAGAAGAAGCTGCAAACGTTGCCCTAAAACGATCTTTCGGTGCTTTGGACTCCTACCTTGCTTCAAACACATTCCTCGTTGGACACTCTGTGACACTGGCTGATATTGTTTTGACGTGCAATCTCTATTATGGATTCGTCTATATTTTGCCTAAGAGCTTTACTTCTGCGTTTCCTCATGTCGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCAAAAAGGTAATTGGTGAGGTAAAGCAGACAGACGCCATCCCACCAGTGAAAACACCTGAGGAGGTTGCAGCAGCTGCCAAAGCAAAGGCTGAGCCCAAGAAACAAGAAGAGAAGCCTGCAGCACCTGCTGAGGAGGCACCAAAGCCCAAGGCCAAAAACCCTCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACTAAGACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGTTACTCCCTTTGGTTCTGTGACTACAAATACAACGACGAGAATACTGTTTCATTTGTGACTTTGAACAAAGTTGGTGGATTCCTCCAGAGAATGGATATTGCTAGGAAGTACGCATTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCACAATTTGTGCTTGATGAGTGCTATGATATGGAGCTGTACGAGTGGAAGAAGGTGGATATCTCGGATGAAGCCCAGAAGGAGAGGGTGAGCCAAATGATTGAAGATCAGGAACCATTTGAGGGTGAAGCTCTTTTGGACGCCAAATGCTTTAAGTGA | 1230 | 44.15 | MALVLHSWTPSKNVYKVLIAAEYNGVKVDLAPDFTMGVSNKSPEFLKMNPIGKVPLLQTPDGPIFESNAITRYVARLKDSILFGSSPIDYGHVEQWIDFSSLEIDIHISTILAPRFGYGVYHAPAEEAANVALKRSFGALDSYLASNTFLVGHSVTLADIVLTCNLYYGFVYILPKSFTSAFPHVERYFWTLVNQPNFKKVIGEVKQTDAIPPVKTPEEVAAAAKAKAEPKKQEEKPAAPAEEAPKPKAKNPLDLLPPSSMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDISDEAQKERVSQMIEDQEPFEGEALLDAKCFK* | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5682858 | 5685853 | - | CsaV3_3G006530.1 | Csa03g00653 | 521558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00653 | 409 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 249 | 409 | IPR036433 | GO:0003746|GO:0006414 | |
Csa03g00653 | 409 | SFLD | Glutathione Transferase (cytosolic) | 3 | 189 | IPR040079 | - | |
Csa03g00653 | 409 | CDD | GST_C_EF1Bgamma_like | 89 | 209 | - | - | |
Csa03g00653 | 409 | Pfam | Glutathione S-transferase, N-terminal domain | 2 | 76 | IPR004045 | - | |
Csa03g00653 | 409 | SUPERFAMILY | Thioredoxin-like | 2 | 77 | IPR036249 | - | |
Csa03g00653 | 409 | SMART | EF1G_2 | 248 | 356 | IPR001662 | GO:0003746|GO:0006414 | |
Csa03g00653 | 409 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 86 | 214 | IPR010987 | - | |
Csa03g00653 | 409 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 409 | IPR044628 | GO:0004364 | |
Csa03g00653 | 409 | MobiDBLite | consensus disorder prediction | 223 | 249 | - | - | |
Csa03g00653 | 409 | Gene3D | Glutaredoxin | 1 | 74 | - | - | |
Csa03g00653 | 409 | MobiDBLite | consensus disorder prediction | 223 | 254 | - | - | |
Csa03g00653 | 409 | Pfam | Elongation factor 1 gamma, conserved domain | 248 | 356 | IPR001662 | GO:0003746|GO:0006414 | |
Csa03g00653 | 409 | Gene3D | - | 80 | 212 | - | - | |
Csa03g00653 | 409 | Pfam | Glutathione S-transferase, C-terminal domain | 122 | 196 | IPR004046 | - | |
Csa03g00653 | 409 | SUPERFAMILY | GST C-terminal domain-like | 73 | 210 | IPR036282 | - | |
Csa03g00653 | 409 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
Csa03g00653 | 409 | CDD | GST_N_EF1Bgamma | 3 | 77 | - | - | |
Csa03g00653 | 409 | SUPERFAMILY | eEF1-gamma domain | 250 | 409 | IPR036433 | GO:0003746|GO:0006414 | |
Csa03g00653 | 409 | SFLD | Main (cytGST) | 3 | 189 | - | - | |
Csa03g00653 | 409 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 249 | 409 | IPR001662 | GO:0003746|GO:0006414 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00653 | Csa-Chr3:5682858 | Csa07g01815 | Csa-Chr7:18386564 | 1.55E-12 | dispersed | |
Csa03g00652 | Csa-Chr3:5678932 | Csa03g00653 | Csa-Chr3:5682858 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00653 | K03233 | - | csv:101207459 | 765.763 |