Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00653 ATGGCTCTGGTTCTGCATTCTTGGACTCCTAGCAAAAATGTTTACAAGGTTTTAATAGCTGCGGAATACAATGGTGTCAAAGTTGACCTTGCCCCAGACTTCACTATGGGTGTAAGCAATAAGAGTCCTGAATTTCTCAAAATGAATCCTATTGGGAAGGTTCCTCTTCTGCAAACACCCGATGGTCCTATCTTTGAGAGCAATGCTATAACCCGCTATGTTGCTCGCTTGAAGGACAGCATTTTATTTGGCTCTTCTCCAATTGATTATGGACATGTTGAACAATGGATCGATTTCTCTTCATTGGAAATTGATATTCACATTTCGACTATTCTGGCGCCTAGATTTGGATATGGTGTTTACCATGCTCCTGCAGAAGAAGCTGCAAACGTTGCCCTAAAACGATCTTTCGGTGCTTTGGACTCCTACCTTGCTTCAAACACATTCCTCGTTGGACACTCTGTGACACTGGCTGATATTGTTTTGACGTGCAATCTCTATTATGGATTCGTCTATATTTTGCCTAAGAGCTTTACTTCTGCGTTTCCTCATGTCGAGAGGTACTTCTGGACATTGGTCAATCAACCAAATTTCAAAAAGGTAATTGGTGAGGTAAAGCAGACAGACGCCATCCCACCAGTGAAAACACCTGAGGAGGTTGCAGCAGCTGCCAAAGCAAAGGCTGAGCCCAAGAAACAAGAAGAGAAGCCTGCAGCACCTGCTGAGGAGGCACCAAAGCCCAAGGCCAAAAACCCTCTTGACTTGCTTCCTCCTAGTTCGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACTAAGACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCAGAAGGTTACTCCCTTTGGTTCTGTGACTACAAATACAACGACGAGAATACTGTTTCATTTGTGACTTTGAACAAAGTTGGTGGATTCCTCCAGAGAATGGATATTGCTAGGAAGTACGCATTTGGAAAGATGCTTGTGATCGGATCAGAGGCACCATACAAGGTGAAGGGACTATGGCTTTTCCGTGGAAAAGAAATCCCACAATTTGTGCTTGATGAGTGCTATGATATGGAGCTGTACGAGTGGAAGAAGGTGGATATCTCGGATGAAGCCCAGAAGGAGAGGGTGAGCCAAATGATTGAAGATCAGGAACCATTTGAGGGTGAAGCTCTTTTGGACGCCAAATGCTTTAAGTGA 1230 44.15 MALVLHSWTPSKNVYKVLIAAEYNGVKVDLAPDFTMGVSNKSPEFLKMNPIGKVPLLQTPDGPIFESNAITRYVARLKDSILFGSSPIDYGHVEQWIDFSSLEIDIHISTILAPRFGYGVYHAPAEEAANVALKRSFGALDSYLASNTFLVGHSVTLADIVLTCNLYYGFVYILPKSFTSAFPHVERYFWTLVNQPNFKKVIGEVKQTDAIPPVKTPEEVAAAAKAKAEPKKQEEKPAAPAEEAPKPKAKNPLDLLPPSSMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDIARKYAFGKMLVIGSEAPYKVKGLWLFRGKEIPQFVLDECYDMELYEWKKVDISDEAQKERVSQMIEDQEPFEGEALLDAKCFK* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5682858 5685853 - CsaV3_3G006530.1 Csa03g00653 521558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00653 409 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 249 409 IPR036433 GO:0003746|GO:0006414
Csa03g00653 409 SFLD Glutathione Transferase (cytosolic) 3 189 IPR040079 -
Csa03g00653 409 CDD GST_C_EF1Bgamma_like 89 209 - -
Csa03g00653 409 Pfam Glutathione S-transferase, N-terminal domain 2 76 IPR004045 -
Csa03g00653 409 SUPERFAMILY Thioredoxin-like 2 77 IPR036249 -
Csa03g00653 409 SMART EF1G_2 248 356 IPR001662 GO:0003746|GO:0006414
Csa03g00653 409 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Csa03g00653 409 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 409 IPR044628 GO:0004364
Csa03g00653 409 MobiDBLite consensus disorder prediction 223 249 - -
Csa03g00653 409 Gene3D Glutaredoxin 1 74 - -
Csa03g00653 409 MobiDBLite consensus disorder prediction 223 254 - -
Csa03g00653 409 Pfam Elongation factor 1 gamma, conserved domain 248 356 IPR001662 GO:0003746|GO:0006414
Csa03g00653 409 Gene3D - 80 212 - -
Csa03g00653 409 Pfam Glutathione S-transferase, C-terminal domain 122 196 IPR004046 -
Csa03g00653 409 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Csa03g00653 409 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Csa03g00653 409 CDD GST_N_EF1Bgamma 3 77 - -
Csa03g00653 409 SUPERFAMILY eEF1-gamma domain 250 409 IPR036433 GO:0003746|GO:0006414
Csa03g00653 409 SFLD Main (cytGST) 3 189 - -
Csa03g00653 409 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 249 409 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00653 Csa-Chr3:5682858 Csa07g01815 Csa-Chr7:18386564 1.55E-12 dispersed
Csa03g00652 Csa-Chr3:5678932 Csa03g00653 Csa-Chr3:5682858 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00653 K03233 - csv:101207459 765.763