Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Csa03g00661	ATGTCTACAGCAAAGCTTCTTCGCCATATCTCTGACCCCATCGATGAAAATCATGACAACAACCGTGAAATCGACCCCTCCGACAGGCTTGTCGGATCGCCCTTCACCGAAGATAGAGATTCTGTTTCCCTTACTTTTGGCGAGCCACTCTTGCGTACTAGTACTGCCAGGATCAGTACTACCTCCCAGCTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCCTCGACTACGAGATTATTGAGAATGAACTTTTCAAGCAGGATTGGAGGTCCAGAAAAAAAAAAGAGATATTTCAGTATATCATCCTCAAATGGGCGTTTTGCCTTTGCATTGGTTTAATTACAGGGCTTGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTACGCTTAACAAATAATCTCATGCTCAAGGAAAAGTACTTTCAGGCATTTGTAGTATACGTTGGTTCCAATAGTGCGTTAGCTATTGCTGCTGCAATCCTCTGTGCCTATATTGCCCCTGCTGCTGCAGGTTCTGGTATACCTGAGGTGAAAGCATACCTCAACGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCCATATTTGCTGTTGCCGGGGGATTTGTGGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATATCGCTTGACTTGGAAGTGGCTCAGATACTTTAAAAATGATAGGGACAGGCGGGATTTGATCACTTGTGGTGCAGCAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACGACTGCTGTAGTAGCTGTTGTCTTAAGGAGTTTCATGGAATTTTGCCGAGGGGGACAATGTGGGTTATTTGGCGAAGGGGGTCTCATCATGTTCAAAATCAATACTGAAAACTCCACTTATGGTACCCCAGATCTTATTGCGATTGTTTTACTTGGAGTTATTGGCGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTTCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGCACGAAACTTATCCTTGTCGTTGCCGTTTCCATATTGACAACTTGTGTCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCGTGCCCAACTGACTTGGATGATCAATGCCCAACCGTTGGTCGCTCAGGAAACTACAAAAACTTCCAATGCCCACCTGGTCATTATAATGATCTTGCTTCTTTATTTTTTAATACCAACGATGATGCCATCCGAAACCTGTTCACATCTGCTAATGACAAGCATTTTCAGCTCTCCTCACTTTTTGTCTTCTTTGTTTCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCTGTGCCTTCTGGGCTCTTCATTCCTGTAATTCTGGCTGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTTCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTAATTTCAAAGTCGGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAAGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTTTCTGGGATCGAAAAGGTCGACAACATTGTCCATGCTTTGAAAATGACAAACCACAATGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATCTACTTGTTTTGCTTAGAGAAAAGAAATTTACTAAGAAAAAGGTGTCACTTAGATCAGAAATTTGGAGGGGCTTCAAAGCACATGATTTTGCAAAACCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGCTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCACCCTACACAGTGGTAGAATCAATGTCACTAGCTAAAGCGGCAATTCTCTTTCATGCACTGGGCTTAAGGCACTTGTTGGTGGTTCCGAAGACACCCGGGAGGCCTCCTATTGCTGGAATTCTTACACGACACGACTTCATGCCGGAGCATATTCTGGGACTTTACCCGCATCTCAACCCCCACAAGTAG	2370	44.18	MSTAKLLRHISDPIDENHDNNREIDPSDRLVGSPFTEDRDSVSLTFGEPLLRTSTARISTTSQLAIVGSNICPIESLDYEIIENELFKQDWRSRKKKEIFQYIILKWAFCLCIGLITGLVGFFNNIAVENIAGHKLRLTNNLMLKEKYFQAFVVYVGSNSALAIAAAILCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSFMEFCRGGQCGLFGEGGLIMFKINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGTKLILVVAVSILTTCVSFGLPWLSQCLPCPTDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSANDKHFQLSSLFVFFVSIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIVHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLREKKFTKKKVSLRSEIWRGFKAHDFAKPGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEHILGLYPHLNPHK*	790

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	5756816	5764261	+	CsaV3_3G006610.1	Csa03g00661	521566

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Csa03g00661	789	CDD	CBS_pair_voltage-gated_CLC_euk_bac	599	776	-	-
Csa03g00661	789	PANTHER	CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER	45	789	-	-
Csa03g00661	789	SUPERFAMILY	CBS-domain pair	600	774	IPR046342	-
Csa03g00661	789	CDD	ClC_6_like	75	596	-	-
Csa03g00661	789	SUPERFAMILY	Clc chloride channel	84	598	IPR014743	-
Csa03g00661	789	Gene3D	Clc chloride channel	98	597	-	-
Csa03g00661	789	Gene3D	-	621	760	IPR046342	-
Csa03g00661	789	PRINTS	Plant CLC chloride channel signature	80	88	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Csa03g00661	789	PRINTS	Plant CLC chloride channel signature	291	299	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Csa03g00661	789	PRINTS	Plant CLC chloride channel signature	305	315	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Csa03g00661	789	PRINTS	Plant CLC chloride channel signature	323	330	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Csa03g00661	789	PRINTS	Plant CLC chloride channel signature	447	463	IPR002251	GO:0005247\|GO:0006821\|GO:0016020
Csa03g00661	789	Pfam	CBS domain	725	773	IPR000644	-
Csa03g00661	789	PRINTS	Chloride channel signature	175	192	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	206	225	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	270	289	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	495	515	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	527	543	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	545	564	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PRINTS	Chloride channel signature	583	597	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Csa03g00661	789	PANTHER	CHLORIDE CHANNEL PROTEIN CLC-C	45	789	-	-
Csa03g00661	789	Pfam	Voltage gated chloride channel	163	577	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085

Duplication type information

Gene1	Location1	Gene2	Location2	Duplicated-type
Csa02g00222	Csa-Chr2:1536525	Csa03g00661	Csa-Chr3:5756816	dispersed
Csa02g02597	Csa-Chr2:22611026	Csa03g00661	Csa-Chr3:5756816	dispersed
Csa03g00661	Csa-Chr3:5756816	Csa06g02438	Csa-Chr6:21758225	dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Csa03g00661	K05016		-	csv:101209987	1452.96