Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00670 ATGTCTCTCCGCAACCATGTTGATGAAATTGACGTTGAGCATCCTGCTGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGCTGGTGTTAATCCTGAGGATTATATTAATCCCAGGTTGTCATCACCTGCTGCCGGAGATGCTGATCCTGGTTCTGATTCTGATGATGTTGATGATTTCGAACTTCTTCGAGATATTCAGAATCGGTTCTCGATTTTGGCTGATGAGCAGCCGCAGAGTACACCAGTGTCTGCAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATACAGCGGCGCTTTGCAGCGTATGAAAGTGATACTTTGAGCAATAAACCCAATCAGTCTCGTGACTATGTTGGATCTCTGAAGTTGGATTCTGACGACATAGCTGTTGAGAGCCAGACATCCTCAAAACGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCCGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAGCGAAGAACAAGTTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGACTATCTGGAATGTATTATGGCCCGGATGAGAATTCTCATGTTGCGTGTTACAGAATGGGATTGGCAAAGTTCCCCCCTGTTGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATCAGTGGGCCACAAGGAATTTCTGGAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCGCTCCTGACAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCAGGGTCGCTCAGGTGCAGAATGTGAAGCAAGATGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAAAGTCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATGGCAGTTTCATTGGGCACAAACAGAACTCCTTTTCAGTGCCTGTCTCGGTATCAAAGAAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGAGGAGGATGATAGACTTCGATCTGCTGTTGCTACATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAGAAAAGGTTATTTCACTCCAGATGAAGACATTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCCAAAAATTGGAACAAGAAAGCAGAGTTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGAGTGTCGGAGGAGATGGAAGAAGTTATTTCCCGATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCCAAATACAGATTCATTATGTAACACTGATGGTCCAATACCTGCCCCAAAAAGAAATGTGAAAACAAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTATCAAAGGTTTCAGACTGATGCAACTGCTCAGGTGGGTATTGCATATAATACCTCTTTTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGAAAACGAAATAGACGTGGAGCTTATACTGCAAAGAGAATAGGGGTACCGGAACTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTGAGAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGAGAGGAGCAACAGTAACTGTACCGAGACTGTTGATGAGAATATTATGGAAGTTCTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAGAAAATGCATGCTTCTCAGAACCAGAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCAGTATTGTCAGAAATGACTAACGACTTGGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTTGCTAGTACTACTGTGGATGATATTGAAGAATTGAAGGGGAAGAGTGCTGCAGACAGGGATTTGGATGACAGTAATAGTTTCTCGTTAGCACACAGTTGCTTAGAACTCCGGACAGTTGACAGTGAAGGCGTAGACAGTTATTCTGTGGACGAATATACAGCTAAGAGCAATGGGGTTTGTAATCCCACCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCAAATAACAGCCATGATAATTTGCTTATTCCTCGTCAACAAATTGTGCAAGAGACATTGGGAACGAAGAAGCCTCTTCATCATAATCAATCAAAGAAGAGAAAACATAGCAATACAGGTCCAAGTACGTTAAAAACATCGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCGTGGGGTTCTTGCAAAAAAGATTGAAGAGGACGGCAATGACACATAACGAGACAGTTGATTGCAGTTCTAATGCTCCTTTAAAAGTTGATAATGACGATAATGAGCCTACCATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTGATGAGTTAAATTAA 3015 42.52 MSLRNHVDEIDVEHPADKEDGVVDEDMEVLQRAYRLAGVNPEDYINPRLSSPAAGDADPGSDSDDVDDFELLRDIQNRFSILADEQPQSTPVSADEEEDEFEMLRSIQRRFAAYESDTLSNKPNQSRDYVGSLKLDSDDIAVESQTSSKRPSMLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRRTSCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPDENSHVACYRMGLAKFPPVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGPQGISGDSDDLDNILASIKDLDIAPDKIREFLPKVNWDKLASMYLQGRSGAECEARWLNFEDPLINRDPWTTSEDKSLLFTIQQKGLNNWIEMAVSLGTNRTPFQCLSRYQRSLNASILKREWTKEEDDRLRSAVATFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTRKGYFTPDEDIRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPDEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDSLCNTDGPIPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNYQRFQTDATAQVGIAYNTSFVPEEVQSSKPQRKRNRRGAYTAKRIGVPELRSDSEWCAKQNLDTESLGLQLNSKESERSNSNCTETVDENIMEVLENKVAEKLTEENACFSEPEKNQNSTGSSGVSVLSEMTNDLVDYNPSILTDTTLFASTTVDDIEELKGKSAADRDLDDSNSFSLAHSCLELRTVDSEGVDSYSVDEYTAKSNGVCNPTQGRRKKNSKTSNNSHDNLLIPRQQIVQETLGTKKPLHHNQSKKRKHSNTGPSTLKTSEAVEEVDDCTLVGFLQKRLKRTAMTHNETVDCSSNAPLKVDNDDNEPTIASFLNKLKRKKHQRPSGDELN* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5891530 5903654 + CsaV3_3G006700.1 Csa03g00670 521575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00670 1004 MobiDBLite consensus disorder prediction 868 911 - -
Csa03g00670 1004 Gene3D - 537 582 - -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 610 667 - -
Csa03g00670 1004 CDD SANT 432 476 IPR001005 -
Csa03g00670 1004 Gene3D - 374 425 - -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 530 580 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 478 529 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 425 480 IPR017930 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 644 667 - -
Csa03g00670 1004 SMART sant 429 478 IPR001005 -
Csa03g00670 1004 SMART sant 376 426 IPR001005 -
Csa03g00670 1004 SMART sant 534 582 IPR001005 -
Csa03g00670 1004 SMART sant 276 373 IPR001005 -
Csa03g00670 1004 SMART sant 482 531 IPR001005 -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 480 576 IPR009057 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 41 67 - -
Csa03g00670 1004 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 953 - -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 353 421 IPR009057 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 868 933 - -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 377 422 IPR001005 -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 536 579 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 425 476 IPR001005 -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 433 494 - -
Csa03g00670 1004 CDD SANT 537 580 IPR001005 -
Csa03g00670 1004 CDD SANT 486 527 IPR001005 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g00670 1004 Gene3D - 481 535 - -
Csa03g00670 1004 Gene3D - 429 479 - -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 409 479 IPR009057 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 529 IPR017930 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 530 584 IPR017930 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 372 424 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00670 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1985.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00670 Csa-Chr3:5891530 Csa03g03183 Csa-Chr3:29424305 1.23E-13 dispersed
Csa03g00670 Csa-Chr3:5891530 Csa02g02287 Csa-Chr2:20417052 1.30E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31122 PF13921 Myb_DNA-bind_6 6.30E-12 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00670 Csa_Chr03 FPKM 1.4219 0.780246 1.926602 2.302187 2.371868 2.816556 2.988326 3.730905 3.807917 4.660408