Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00670 ATGTCTCTCCGCAACCATGTTGATGAAATTGACGTTGAGCATCCTGCTGACAAGGAAGATGGTGTGGTTGATGAGGACATGGAAGTTCTTCAGAGAGCCTATAGGCTTGCTGGTGTTAATCCTGAGGATTATATTAATCCCAGGTTGTCATCACCTGCTGCCGGAGATGCTGATCCTGGTTCTGATTCTGATGATGTTGATGATTTCGAACTTCTTCGAGATATTCAGAATCGGTTCTCGATTTTGGCTGATGAGCAGCCGCAGAGTACACCAGTGTCTGCAGACGAGGAGGAAGATGAATTTGAGATGCTTCGTTCAATACAGCGGCGCTTTGCAGCGTATGAAAGTGATACTTTGAGCAATAAACCCAATCAGTCTCGTGACTATGTTGGATCTCTGAAGTTGGATTCTGACGACATAGCTGTTGAGAGCCAGACATCCTCAAAACGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCCGCGTTGGCATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTGCAAAATTCTCAAAGATTTCCAGGGTTCATGTAAGCGAAGAACAAGTTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTAATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGACTATCTGGAATGTATTATGGCCCGGATGAGAATTCTCATGTTGCGTGTTACAGAATGGGATTGGCAAAGTTCCCCCCTGTTGATCGAAAGAAATGGTCCATTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAGTTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATCAGTGGGCCACAAGGAATTTCTGGAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCGCTCCTGACAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCAGGGTCGCTCAGGTGCAGAATGTGAAGCAAGATGGTTGAATTTTGAAGACCCCCTAATTAATCGAGATCCATGGACTACAAGTGAGGATAAAAGTCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATGGCAGTTTCATTGGGCACAAACAGAACTCCTTTTCAGTGCCTGTCTCGGTATCAAAGAAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGAGGAGGATGATAGACTTCGATCTGCTGTTGCTACATTTGGCGTGAGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGCACACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAGAAAAGGTTATTTCACTCCAGATGAAGACATTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCCAAAAATTGGAACAAGAAAGCAGAGTTTTTGCCTGGTCGGAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAGTGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCATCACGTACAGATAATGAGTGTCGGAGGAGATGGAAGAAGTTATTTCCCGATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAAACAGAGCGTCCTGCTCTTGGTCCTGCTGACTTTCGACCCAGGCCAAATACAGATTCATTATGTAACACTGATGGTCCAATACCTGCCCCAAAAAGAAATGTGAAAACAAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTATCAAAGGTTTCAGACTGATGCAACTGCTCAGGTGGGTATTGCATATAATACCTCTTTTGTCCCAGAAGAGGTTCAATCTTCAAAGCCTCAAAGAAAACGAAATAGACGTGGAGCTTATACTGCAAAGAGAATAGGGGTACCGGAACTACGTTCTGACAGCGAGTGGTGTGCTAAACAGAATTTGGACACTGAGAGCCTTGGGTTGCAGCTGAATAGTAAGGAATCTGAGAGGAGCAACAGTAACTGTACCGAGACTGTTGATGAGAATATTATGGAAGTTCTTGAGAACAAAGTTGCAGAGAAGCTTACTGAAGAAAATGCATGCTTCTCAGAACCAGAAAAAAATCAAAACTCAACCGGATCTTCTGGAGTCTCAGTATTGTCAGAAATGACTAACGACTTGGTTGACTATAATCCCTCTATCCTCACAGATACAACATTGTTTGCTAGTACTACTGTGGATGATATTGAAGAATTGAAGGGGAAGAGTGCTGCAGACAGGGATTTGGATGACAGTAATAGTTTCTCGTTAGCACACAGTTGCTTAGAACTCCGGACAGTTGACAGTGAAGGCGTAGACAGTTATTCTGTGGACGAATATACAGCTAAGAGCAATGGGGTTTGTAATCCCACCCAAGGCAGAAGGAAGAAAAATAGCAAAACATCAAATAACAGCCATGATAATTTGCTTATTCCTCGTCAACAAATTGTGCAAGAGACATTGGGAACGAAGAAGCCTCTTCATCATAATCAATCAAAGAAGAGAAAACATAGCAATACAGGTCCAAGTACGTTAAAAACATCGGAGGCAGTTGAGGAGGTTGATGACTGCACTCTCGTGGGGTTCTTGCAAAAAAGATTGAAGAGGACGGCAATGACACATAACGAGACAGTTGATTGCAGTTCTAATGCTCCTTTAAAAGTTGATAATGACGATAATGAGCCTACCATTGCCTCGTTTCTTAATAAATTGAAGAGAAAAAAGCATCAGCGGCCTAGTGGTGATGAGTTAAATTAA 3015 42.52 MSLRNHVDEIDVEHPADKEDGVVDEDMEVLQRAYRLAGVNPEDYINPRLSSPAAGDADPGSDSDDVDDFELLRDIQNRFSILADEQPQSTPVSADEEEDEFEMLRSIQRRFAAYESDTLSNKPNQSRDYVGSLKLDSDDIAVESQTSSKRPSMLAFEKGSLPKAALAFVDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRCKILKDFQGSCKRRTSCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSGMYYGPDENSHVACYRMGLAKFPPVDRKKWSIVERENLGKGIRQQFQEMVLQISVDQISGPQGISGDSDDLDNILASIKDLDIAPDKIREFLPKVNWDKLASMYLQGRSGAECEARWLNFEDPLINRDPWTTSEDKSLLFTIQQKGLNNWIEMAVSLGTNRTPFQCLSRYQRSLNASILKREWTKEEDDRLRSAVATFGVRDWQAVASTLEGRAGTQCSNRWKKSLDPARTRKGYFTPDEDIRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPDEVPLLQEARKIQKAALISNFVDRETERPALGPADFRPRPNTDSLCNTDGPIPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNYQRFQTDATAQVGIAYNTSFVPEEVQSSKPQRKRNRRGAYTAKRIGVPELRSDSEWCAKQNLDTESLGLQLNSKESERSNSNCTETVDENIMEVLENKVAEKLTEENACFSEPEKNQNSTGSSGVSVLSEMTNDLVDYNPSILTDTTLFASTTVDDIEELKGKSAADRDLDDSNSFSLAHSCLELRTVDSEGVDSYSVDEYTAKSNGVCNPTQGRRKKNSKTSNNSHDNLLIPRQQIVQETLGTKKPLHHNQSKKRKHSNTGPSTLKTSEAVEEVDDCTLVGFLQKRLKRTAMTHNETVDCSSNAPLKVDNDDNEPTIASFLNKLKRKKHQRPSGDELN* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5891530 5903654 + CsaV3_3G006700.1 Csa03g00670 521575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00670 1004 MobiDBLite consensus disorder prediction 868 911 - -
Csa03g00670 1004 Gene3D - 537 582 - -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 610 667 - -
Csa03g00670 1004 CDD SANT 432 476 IPR001005 -
Csa03g00670 1004 Gene3D - 374 425 - -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 530 580 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 478 529 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 425 480 IPR017930 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 644 667 - -
Csa03g00670 1004 SMART sant 429 478 IPR001005 -
Csa03g00670 1004 SMART sant 376 426 IPR001005 -
Csa03g00670 1004 SMART sant 534 582 IPR001005 -
Csa03g00670 1004 SMART sant 276 373 IPR001005 -
Csa03g00670 1004 SMART sant 482 531 IPR001005 -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 480 576 IPR009057 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 41 67 - -
Csa03g00670 1004 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 953 - -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 353 421 IPR009057 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 868 933 - -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 377 422 IPR001005 -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 536 579 IPR001005 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 425 476 IPR001005 -
Csa03g00670 1004 Pfam Myb-like DNA-binding domain 433 494 - -
Csa03g00670 1004 CDD SANT 537 580 IPR001005 -
Csa03g00670 1004 CDD SANT 486 527 IPR001005 -
Csa03g00670 1004 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g00670 1004 Gene3D - 481 535 - -
Csa03g00670 1004 Gene3D - 429 479 - -
Csa03g00670 1004 SUPERFAMILY Homeodomain-like 409 479 IPR009057 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 482 529 IPR017930 -
Csa03g00670 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 530 584 IPR017930 -
Csa03g00670 1004 ProSiteProfiles Myb-like domain profile. 372 424 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00670 Csa-Chr3:5891530 Csa03g03183 Csa-Chr3:29424305 1.23E-13 dispersed
Csa03g00670 Csa-Chr3:5891530 Csa02g02287 Csa-Chr2:20417052 1.30E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31122 PF13921 Myb_DNA-bind_6 6.30E-12 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00670 K09422 - csv:101216287 1985.3