Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00676 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCTCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTCGAGGAGGTGCCTCCTGAGCTCCCAGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGTTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCCAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATGCGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.31 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDACERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5966227 5974879 - CsaV3_3G006760.1 Csa03g00676 521581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00676 255 SMART PHD_3 201 249 IPR001965 -
Csa03g00676 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Csa03g00676 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Csa03g00676 255 MobiDBLite consensus disorder prediction 183 200 - -
Csa03g00676 255 CDD PHD_AL_plant 202 251 IPR044104 -
Csa03g00676 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Csa03g00676 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Csa03g00676 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Csa03g00676 255 MobiDBLite consensus disorder prediction 163 182 - -
Csa03g00676 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Csa03g00676 255 MobiDBLite consensus disorder prediction 141 201 - -
Csa03g00676 255 MobiDBLite consensus disorder prediction 141 162 - -
Csa03g00676 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa03g00676 255 Pfam PHD-finger 202 251 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00676 Csa-Chr3:5966227 Csa07g02370 Csa-Chr7:21860290 1.79E-115 dispersed
Csa03g00676 Csa-Chr3:5966227 Csa05g00818 Csa-Chr5:5926088 2.44E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31123 PF12165 Alfin 2.50E-68 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00676 - - csv:101212601 489.96