Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00676 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTCGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCTCTTACCACTGATGTCGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTCGAGGAGGTGCCTCCTGAGCTCCCAGAACCAGCATTAGGGATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGTTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCCAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAACAGTCTGCCACTCATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGACGAGGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGTGATGCGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 768 48.31 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGDEEEEEEDDEQGATCGACGDNYGNDEFWICCDACERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5966227 5974879 - CsaV3_3G006760.1 Csa03g00676 521581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00676 255 SMART PHD_3 201 249 IPR001965 -
Csa03g00676 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Csa03g00676 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 252 - -
Csa03g00676 255 MobiDBLite consensus disorder prediction 183 200 - -
Csa03g00676 255 CDD PHD_AL_plant 202 251 IPR044104 -
Csa03g00676 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Csa03g00676 255 PANTHER CPG BINDING PROTEIN 1 252 IPR045104 GO:0006355|GO:0042393
Csa03g00676 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Csa03g00676 255 MobiDBLite consensus disorder prediction 163 182 - -
Csa03g00676 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Csa03g00676 255 MobiDBLite consensus disorder prediction 141 201 - -
Csa03g00676 255 MobiDBLite consensus disorder prediction 141 162 - -
Csa03g00676 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa03g00676 255 Pfam PHD-finger 202 251 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00676 - - - csv:101212601 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00676 Csa-Chr3:5966227 Csa07g02370 Csa-Chr7:21860290 1.79E-115 dispersed
Csa03g00676 Csa-Chr3:5966227 Csa05g00818 Csa-Chr5:5926088 2.44E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00676 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 6.2e-114 407.1
Csa06g02014 . 9 251 Alfin-like Transcription Factor Family AT1G14510 75.7 1.3e-95 346.3
Csa07g02370 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Csa03g03069 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.0 1.9e-78 289.3
Csa05g00818 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 1.9e-78 289.3
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.1 2.3e-108 388.7
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 1.2e-93 339.7
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.7 4.1e-81 298.1
Csa03g03069 . 8 241 Alfin-like Transcription Factor Family AT5G26210 58.1 1.0e-79 293.5
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT3G42790 74.7 6.0e-101 364.0
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Csa03g00676 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 2.8e-90 328.6
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT3G42790 60.6 4.8e-82 301.2
Csa03g03069 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 6.5e-79 290.8
Csa05g00818 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.2 3.3e-112 401.4
Csa03g03069 . 1 241 Alfin-like Transcription Factor Family AT5G05610 75.2 5.4e-107 384.0
Csa07g02370 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.8e-90 327.0
Csa06g02014 . 8 253 Alfin-like Transcription Factor Family AT5G05610 63.8 5.1e-89 324.3
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.8 3.2e-83 305.1
Csa05g00818 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 1.6e-95 345.9
Csa03g03069 . 43 241 Alfin-like Transcription Factor Family AT3G11200 77.3 1.9e-88 322.4
Csa07g02370 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Csa06g02014 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.6 1.7e-73 272.7
Csa03g00676 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 7.4e-69 257.3
Csa03g00676 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Csa06g02014 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.1e-65 245.0
Csa07g02370 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Csa03g03069 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 9.6e-54 207.2
Csa05g00818 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Csa06g02014 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.2e-74 273.9
Csa07g02370 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Csa03g00676 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Csa05g00818 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-52 203.0
Csa03g03069 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 3.9e-52 201.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31123 PF12165 Alfin 2.50E-68 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00676 Csa_Chr03 FPKM 8.445731 9.289428 11.19302 12.368047 58.901508 63.044647 57.169571 5.538691 5.367161 5.898455