Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00687 | ATGGTTCTTGTTGGGTCTTTGCAACTGTCCTATCATCTGAGACCGTGGAGAAATTATTTGCATGAAGAAAATCTGAAGTTTACATCCCAGAGATATGGCATCCGGCTTCTGAATGTATCCAGTTCATCGTCTCTTTTGTTTCAGAAGGACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTATTCAGGTGCCAGTCATCATTGATGACAAACCAACCACTGGATCCTCCTGGGATGAAGGCTGCTATAGTGACATTGATGAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTACTTCCCCCAGTTTGTATTATACTATTTGCTGTATGGGGTCTTGGACCATTTTTGTGTTATACAAGAAGCCTATTCCATAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTTTCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAATAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGCTGTCCACTGTGCTGGCCTCTGCATATTGTTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCAAGTGACGCCAGAAATATGGGCTTTCAATTTGCATGGAAAGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTAGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGCACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATTAACAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGGAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCATGGGGCTCGACTTGCAACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAATGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAGCCTCCTTACAAAGTTTATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGTACAACTGGAGAACAAAATGGTAAGCCCATTGCACGGTCATCAGGTGACAGTAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGATAGAAGTCAAGACTGGAGGAGACGGTGATACAAAAAAGCATTCCAAAGCTTCAATGTCAGCCTCTGAAGACAAATCAAGCAATGAATTGAAATATAAACCATCATCAAAGTCTGCTGCAAGTACCTCTGATACGCCAACTTCTAATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCCGTCCCAAGCAATCCAAAGACAGCTTGGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAGATGTTAAGAAACCCGGAGGAACTACTTCAGCAGCAGCTTCACAACCAAGAATCGAAGGTGAGCAGACAACAGTTTCAAATCCATCAACAAAGAAGCCTGGGGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGACGGCTCTAAGAGAACACTTCCTATTGAGGACAATGTACCTACTACCGCATCTGGAGCAAAAGATTTGGCTGCATTCAATGGAGCAACAACGACAGATAAGAATACGAAACGTCAGTCTCCTTCATCTCCTACCACATCCTCTAGTGAATAG | 2175 | 41.52 | MVLVGSLQLSYHLRPWRNYLHEENLKFTSQRYGIRLLNVSSSSSLLFQKDTWSTHLFSMKYPPNYTVPSRYNVFRCQSSLMTNQPLDPPGMKAAIVTLMRFCNVLGGCPPPVIKLLPPVCIILFAVWGLGPFLCYTRSLFHNDSNWKKSRTYNVMTLFLQPLLLWTGATLICRALDPIVLRTESSQVVKQRVLNFVRSLSTVLASAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLENVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPIARSSGDSKAAKETMSSDRKIEVKTGGDGDTKKHSKASMSASEDKSSNELKYKPSSKSAASTSDTPTSNAKPTKSDADNSLEDSRPKQSKDSLGSNMQNFKPSLPAVSSPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSTKKPGVEENIILGVALDGSKRTLPIEDNVPTTASGAKDLAAFNGATTTDKNTKRQSPSSPTTSSSE* | 725 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6108124 | 6118729 | - | CsaV3_3G006870.1 | Csa03g00687 | 521592 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 570 | 593 | - | - | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 494 | 665 | - | - | |
Csa03g00687 | 724 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 1 | 714 | IPR045042 | - | |
Csa03g00687 | 724 | Pfam | Mechanosensitive ion channel | 240 | 448 | IPR006685 | GO:0016020|GO:0055085 | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 702 | 724 | - | - | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 530 | 569 | - | - | |
Csa03g00687 | 724 | Gene3D | - | 196 | 296 | - | - | |
Csa03g00687 | 724 | Gene3D | - | 298 | 353 | IPR023408 | - | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 608 | 623 | - | - | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 680 | 724 | - | - | |
Csa03g00687 | 724 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 1 | 714 | - | - | |
Csa03g00687 | 724 | MobiDBLite | consensus disorder prediction | 637 | 662 | - | - | |
Csa03g00687 | 724 | SUPERFAMILY | Sm-like ribonucleoproteins | 282 | 352 | IPR010920 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g02208 | Csa-Chr2:19856439 | Csa03g00687 | Csa-Chr3:6108124 | 0 | dispersed | |
Csa03g00687 | Csa-Chr3:6108124 | Csa03g00877 | Csa-Chr3:7320397 | 2.07E-14 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00687 | K22047 | - | csv:101217250 | 1410.59 |