Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00687 ATGGTTCTTGTTGGGTCTTTGCAACTGTCCTATCATCTGAGACCGTGGAGAAATTATTTGCATGAAGAAAATCTGAAGTTTACATCCCAGAGATATGGCATCCGGCTTCTGAATGTATCCAGTTCATCGTCTCTTTTGTTTCAGAAGGACACTTGGAGCACTCATTTATTTAGCATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTATTCAGGTGCCAGTCATCATTGATGACAAACCAACCACTGGATCCTCCTGGGATGAAGGCTGCTATAGTGACATTGATGAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTACTTCCCCCAGTTTGTATTATACTATTTGCTGTATGGGGTCTTGGACCATTTTTGTGTTATACAAGAAGCCTATTCCATAATGATAGTAACTGGAAGAAAAGTCGGACGTATAATGTCATGACCTTGTTTCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAATAGTTTTACGTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGCTGTCCACTGTGCTGGCCTCTGCATATTGTTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCAAGTGACGCCAGAAATATGGGCTTTCAATTTGCATGGAAAGCTGTATATTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTATTAGGCTTTTCAACCCAAAAATTGCTTACAGCTGGAGGTCTTGGGACTGTATTGTTGACATTAGCTGGCCGTGAGATTTTCACCAACTTTCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGTACTGTTGAGCACGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAATTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATCAGCCATTTGGACGTCAATAAAATTAACAACATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGGAGAGTATTTTTGGAAAACGTGGATTCTGAAAATCAGGCACTTTTGATTTTGATATCTTGTTTTGTCAAGACTTCACATTTTGAAGAATACCTATGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGGCACCATGGGGCTCGACTTGCAACGCCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAATGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCAACTTTGAATCGCCGCATGCTGATGATTGAGCCTCCTTACAAAGTTTATGGAGAAGATAGAAAACAAAGCCATAGCAGGACATCACGTACAACTGGAGAACAAAATGGTAAGCCCATTGCACGGTCATCAGGTGACAGTAAAGCAGCTAAAGAGACAATGTCATCTGATAGAAAGATAGAAGTCAAGACTGGAGGAGACGGTGATACAAAAAAGCATTCCAAAGCTTCAATGTCAGCCTCTGAAGACAAATCAAGCAATGAATTGAAATATAAACCATCATCAAAGTCTGCTGCAAGTACCTCTGATACGCCAACTTCTAATGCCAAACCAACTAAATCAGATGCTGATAATTCATTGGAAGATTCCCGTCCCAAGCAATCCAAAGACAGCTTGGGAAGTAACATGCAGAACTTCAAGCCTTCCCTTCCTGCTGTTTCCTCTCCGGAAGATGTTAAGAAACCCGGAGGAACTACTTCAGCAGCAGCTTCACAACCAAGAATCGAAGGTGAGCAGACAACAGTTTCAAATCCATCAACAAAGAAGCCTGGGGTAGAAGAGAATATAATCCTTGGTGTTGCTTTGGACGGCTCTAAGAGAACACTTCCTATTGAGGACAATGTACCTACTACCGCATCTGGAGCAAAAGATTTGGCTGCATTCAATGGAGCAACAACGACAGATAAGAATACGAAACGTCAGTCTCCTTCATCTCCTACCACATCCTCTAGTGAATAG 2175 41.52 MVLVGSLQLSYHLRPWRNYLHEENLKFTSQRYGIRLLNVSSSSSLLFQKDTWSTHLFSMKYPPNYTVPSRYNVFRCQSSLMTNQPLDPPGMKAAIVTLMRFCNVLGGCPPPVIKLLPPVCIILFAVWGLGPFLCYTRSLFHNDSNWKKSRTYNVMTLFLQPLLLWTGATLICRALDPIVLRTESSQVVKQRVLNFVRSLSTVLASAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKLLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHQFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDSENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHGARLATPIRTMQKMHSDSDLENVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPIARSSGDSKAAKETMSSDRKIEVKTGGDGDTKKHSKASMSASEDKSSNELKYKPSSKSAASTSDTPTSNAKPTKSDADNSLEDSRPKQSKDSLGSNMQNFKPSLPAVSSPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSTKKPGVEENIILGVALDGSKRTLPIEDNVPTTASGAKDLAAFNGATTTDKNTKRQSPSSPTTSSSE* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6108124 6118729 - CsaV3_3G006870.1 Csa03g00687 521592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00687 724 MobiDBLite consensus disorder prediction 570 593 - -
Csa03g00687 724 MobiDBLite consensus disorder prediction 494 665 - -
Csa03g00687 724 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 714 IPR045042 -
Csa03g00687 724 Pfam Mechanosensitive ion channel 240 448 IPR006685 GO:0016020|GO:0055085
Csa03g00687 724 MobiDBLite consensus disorder prediction 702 724 - -
Csa03g00687 724 MobiDBLite consensus disorder prediction 530 569 - -
Csa03g00687 724 Gene3D - 196 296 - -
Csa03g00687 724 Gene3D - 298 353 IPR023408 -
Csa03g00687 724 MobiDBLite consensus disorder prediction 608 623 - -
Csa03g00687 724 MobiDBLite consensus disorder prediction 680 724 - -
Csa03g00687 724 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 714 - -
Csa03g00687 724 MobiDBLite consensus disorder prediction 637 662 - -
Csa03g00687 724 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02208 Csa-Chr2:19856439 Csa03g00687 Csa-Chr3:6108124 0 dispersed
Csa03g00687 Csa-Chr3:6108124 Csa03g00877 Csa-Chr3:7320397 2.07E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00687 K22047 - csv:101217250 1410.59