Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00690 ATGGCTCCTGCCACTAATTGGCTTTCCTTCTCCCTTTCCCCCATTGAAATGCTTCGCTCTTCTGACTCCCCCTTCCTCCCTTTTGATTCTTCCTCCTCCTCCCCCTCCCCTCACTATCTTCTCGACAATTTCTATCATGGTTGGAGTAACAATAATGCTGCTAATTCTCACTCTAAATCATCTCAACTTTTCTTCAACAATCAAGAAGAAGAAGCTGCTGCTGCTGCTGTCAAAGATGACCAAACCACTATCTTTCTTCATCCACAAACCCAAACCCACCACCACCACCACCACCACCATCATCAACCCAAGCTTGAAGATTTCCTTGGTGATTCTTCTCCCATGGTGCGATATTCTGACAGTCAAACCGACACCCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCTCCTTACTTCCCTCATGACCAACAAGATCTCAAAACCATTGCAGCTTTTCAAGCTTTCTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTCCTACAACCCATATCCCTTCTGCTCATTCTATTGACTCTTCTCTTACCAACAATGATTTCCCTTCTTTCTCTACTGGTGCTCTCTCTCTCGCCGTCGCTCAATCCTCCGACACCGCTCCTGCGCCCGTCGTTGTGGCTGTTGATTCTGATTCTTCTAAGAAAATTGCTGACACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGTTTACTTAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCCACAGCAACCACAAATTTTCCTGTTTCGAATTATGCCAAGGAATTAGAGGAAATGAAACAAGTCACCAGGCAAGAGTTTATTGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGCGAGGTGCTTCTATTTATAGAGGTGTAACAAGGCATCACCAACAGGGTCGATGGCAGGCGAGAATTGGTCGCGTTGCTGGGAACAAGGACTTGTATCTTGGAACATTTGCTACTGAAGAGGAAGCAGCTGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCTGTGACGAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCGAAGAGTGCACTGCCTATTGGAGGAGCAGCAAAGAGGCTGAAGCTTTGCCTGGAATCCGATCAGAAGCCAATTCCAAATCACGATCAAGCAACCCAATGTAGCAGTGGAAGCAACAATATCAACTTTGGCACTGCCATGCAAGCTGTCCCGCCGATCCCTTGTGGCATTCCATACGACACTGCAGCTGTGCTGTATCACCATAACTACTTCCATCATCTTCAACCTAATGCCATCGGTTCATCGGAGTCGACCAGCCCAGGCATTGCAGTACCAGGGACTGTGGGACCTCATCAAGCAGCCGAGTTTTTTGTGTGGCCTCACCAATCGTATTAG 1554 46.78 MAPATNWLSFSLSPIEMLRSSDSPFLPFDSSSSSPSPHYLLDNFYHGWSNNNAANSHSKSSQLFFNNQEEEAAAAAVKDDQTTIFLHPQTQTHHHHHHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPYFPHDQQDLKTIAAFQAFSANSGSEVDDSASIPTTHIPSAHSIDSSLTNNDFPSFSTGALSLAVAQSSDTAPAPVVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKQVTRQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQATQCSSGSNNINFGTAMQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAVPGTVGPHQAAEFFVWPHQSY* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6134843 6139602 - CsaV3_3G006900.1 Csa03g00690 521595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00690 517 CDD AP2 338 399 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 ProSiteProfiles AP2/ERF domain profile. 237 303 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 512 - -
Csa03g00690 517 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677
Csa03g00690 517 SMART rav1_2 339 403 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 SMART rav1_2 237 309 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 CDD AP2 236 305 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 Pfam AP2 domain 237 295 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 Pfam AP2 domain 339 389 IPR001471 GO:0003700|GO:0006355
Csa03g00690 517 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700|GO:0006355
Csa03g00690 517 Gene3D AP2/ERF domain 237 305 IPR036955 GO:0003700|GO:0006355
Csa03g00690 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 512 - -
Csa03g00690 517 SUPERFAMILY DNA-binding domain 236 305 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00690 Csa-Chr3:6134843 Csa04g01404 Csa-Chr4:14070320 1.20E-122 dispersed
Csa03g00690 Csa-Chr3:6134843 Csa06g03048 Csa-Chr6:26200005 1.36E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31125 PF00847 AP2 9.80E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00690 K09285 - csv:101217714 966.452