Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00697 ATGAAGAAGTCATCGGTCAATTTGACCGTTTGCTTCATAGCTATGGTTGTGGTCGTCGTCTCATTCTTCTTCTGTCTCGGTCACAATGGCTACCGGATTCGGACATCACCGGTCAGGAGATACCTAAGCAACATAGACATCAACAATTCTTCGAGACTATTCAATGTCACACTGCAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATCGTCCAAGTTACTCTTTCAACTCCCGATGGCGACGTGGTTGGATTGAGCTACAATGGAATCCCCAACATTCTCGAAACCAACAACGAAGAGCAAAACAGAGGCTACTGGGACGCCGTGTGGAACAACCCAGACGAACCCATTGCCACGGACAGATTAAAAGGAGAGAGTTATGAAGTGATAATAGGGAACGAGGAGCAACTAGAAATATCGTTTAACAAAACATGGAGTATTGGAAAAGGGAATGAGACGGCGCCTGTAAATGTGGACAAAAGGTACGTATTGCTGAGAGGAAGTTCTGGGTTTTATTGTTATGCGATATTCGAGAGACCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGAATTGTTTTTAAGCTTCAAAGCCAAATGTTTGATTATATGGCTGTCTCGGACGATAGGCAAAGAGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTTTCCCGAGGCTGTTCTTTTGACTAATCCTTCCAATGAAGAACTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAACAGAGGACAAGGACAATCAAGTTCACGGCTGGATCTCCAGTGATCCGCCAGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTTGCCGGTCCGGTCAAGCAGGATCTTACCTCCCATGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGTATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTGTCTTTGTTTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGGAAGATGCCAAACAACAGTTGGCAATAGAAATCAACGAGTGGCCCTATACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCAGGCCAGTTATTCGTTCGTGATCGGTACATCAGTAGCCGACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAGGCGGAAACCAAGGGCTATCAGTTCTGGACTCAAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGGGTTGGGGTTTACAATCTGTACGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAGGCAAATATTACAATCGAGTTTGGGTCTGAAATCAATTTGGATGAGATGGTGTTTGATCCACCGAGACAAGGCCCTACCATCTGGGAGATTGGCTTTCCTGATCGCACTGCAGCGGAGTTTTATGTGCCTGACCCTTATCCAACTCTCATGAATAAGCTATACAACAACCATGCTGACAAGTTCAGACAGTATGGCTTGTGGGAACGTTATGCAGCTATTTATCCAAATAATGATCTTGTGTTTACCGTTGGTGTCGATGATTATAAAGTGGACTGGTTCTATGCTCATGTTAACAGGTAG 1686 46.38 MKKSSVNLTVCFIAMVVVVVSFFFCLGHNGYRIRTSPVRRYLSNIDINNSSRLFNVTLQRKGGYVIMDNGIVQVTLSTPDGDVVGLSYNGIPNILETNNEEQNRGYWDAVWNNPDEPIATDRLKGESYEVIIGNEEQLEISFNKTWSIGKGNETAPVNVDKRYVLLRGSSGFYCYAIFERPIGWPQIEMDQVRIVFKLQSQMFDYMAVSDDRQRVMPTMRDRENGEPLAFPEAVLLTNPSNEELRGEVDDKYQYSTEDKDNQVHGWISSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPVFVYLNSVSPEEDSLSLWEDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVAGQLFVRDRYISSRLMRASNAFVGLALPGPVGSWQAETKGYQFWTQADNHGNFLINNIRVGVYNLYAFVPGFIGDYKYEANITIEFGSEINLDEMVFDPPRQGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAIYPNNDLVFTVGVDDYKVDWFYAHVNR* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6262365 6270160 - CsaV3_3G006970.1 Csa03g00697 521602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00697 561 Pfam Rhamnogalacturonate lyase family 54 248 IPR010325 -
Csa03g00697 561 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 561 - -
Csa03g00697 561 SUPERFAMILY Galactose mutarotase-like 67 341 IPR011013 GO:0003824|GO:0005975|GO:0030246
Csa03g00697 561 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 56 561 - -
Csa03g00697 561 SUPERFAMILY Galactose-binding domain-like 486 561 IPR008979 -
Csa03g00697 561 Pfam Polysaccharide lyase family 4, domain III 488 561 IPR029411 -
Csa03g00697 561 SUPERFAMILY Starch-binding domain-like 411 476 IPR013784 GO:0030246
Csa03g00697 561 Gene3D - 376 476 - -
Csa03g00697 561 CDD RGL4_N 62 346 - -
Csa03g00697 561 Gene3D - 54 344 IPR014718 GO:0030246
Csa03g00697 561 CDD RGL4_M 379 475 IPR029413 -
Csa03g00697 561 Pfam Polysaccharide lyase family 4, domain II 402 474 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00697 Csa-Chr3:6262365 Csa03g04506 Csa-Chr3:39289600 0 dispersed
Csa03g00697 Csa-Chr3:6262365 Csa03g04504 Csa-Chr3:39272026 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00697 K18195 - csv:101215252 1165.21