Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00702 ATGCCATTCTTCAACCTTCACCCTTCTTCTCCCTTTCTTCTTCTCTTCTTCTTCTTCTTCTTTCACCTTCCTGCTTTTGCTATCCTCTCTGATCGTGATTATGATATTCTGATTCGGGTTAAAACCTCTTATCTCCATGATCCCAATGGCTCTATCAACAATTGGGTTCCAAATCAAGCTCACAATGCTTGTAATTGGACTGGCATCACCTGCGACTCCACTAATTCCTCTATTCTGTCCATCGATCTCAGTAATTCCGGTTTCGTCGGCGGATTTCCCTTCGTTTTTTGCCGGATTCCCACTCTTAAATCCCTTTCTATCTCCAACACTAACCTTAATGGAACTTTACTCTCTCCTTCCTTCTCTCTTTGTTCTCACTTGCAACTCCTCAATCTTTCTAATAACCTTCTTGTTGGTAACTTGCCGGACTTTTCTTCTGGTTTCAAACAACTGCAAACTCTCGATCTCTCTGCCAACAATTTCACAGGTGAAATTCCTCATAGCATTGGGGGGTTATCCGCACTGAAAGTGCTCCGTTTGACGCAGAATCTACTCGACGGCTCATTACCTTCCGTTCTGGGAAATCTCAGTGAGCTAACTGAAATGGCCATCGCTTATAATCCGTTTAAACCCGGTCCGCTACCGCCTGAAATCGGCAACCTGACGAAACTTGTAAATATGTTTTTACCGTCTTCCAAACTCATTGGACCCCTTCCTGATTCCATTGGAAACCTTGCTCTACTTACTAATCTCGATTTATCTGCCAATTCAATTTCGGGACCGATCCCGTATTCAATCGGTGGATTAAGAAGTATAAAGAGCATTCGACTCTATAACAACCAAATCTCCGGGGAGTTGCCAGAGAGCATCGGAAATTTGACTACTTTGTTTTCCCTGGACTTATCGCAGAATAGTCTCACCGGGAAATTGTCGGAGAAAATTGCTGCTTTGCCTCTTCAGTCTCTGCATCTCAATGACAATTTCCTTGAAGGCGAGGTTCCCGAGACCTTAGCTTCTAACAAAAATCTTTTGAGTTTGAAACTCTTTAACAATAGCTTTTCCGGCAAACTTCCTTGGAATTTGGGTCTAACTTCTTATTTGAATTTGTTTGACGTCTCTTCCAACAATTTCATGGGCGAAATTCCGAAATTTCTCTGCCATGGAAATCAACTTCAAAGAATCGTTTTATTCAATAATCATTTCTCAGGAAGTTTTCCAGAAGCGTACGGTGGTTGCGATTCTCTGCTTTATGTCAGAATTGAGAACAATCAACTTTCCGGGCAGATACCAGACTCGTTCTGGAATCTCTCTAGACTTACTTATATTCGGATATCAGAAAATCGATTTGAGGGCTCCATTCCGCTTGCGATAAGTGGCATTCGTTATCTCCAAGATTTGGTGATTTCCGGCAACTTCTTCTCCGGCCAATTACCGAAGGAGATTTGCAAACTGCGAGACCTCGTCCGGTTAGATGTCAGCAGGAATAAATTCTCAGGGGGAGTTCCTTCATGTATAACAGAGTTGAAGCAACTTCAAAAGCTCGACCTCCAAGAAAACATGTTTACCAGAGAAATACCCAAGTTGGTTAACACATGGAAAGAGTTAACCGAGTTGAATCTATCTCACAATCAATTCACCGGTGAGATTCCGCCTCAACTCGGAGATTTGCCAGTTCTAAAATATTTAGATCTCTCTTCAAATTTACTCTCCGGCGAAATCCCCGAGGAATTAACAAAGCTAAAACTTGGTCAGTTCAATTTTTCCGACAACAAATTGACCGGAGAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAATAGCCTAATGGGTAATCCCGGTCTATGTAGCCCGGATTTGAAGCCGCTGAACCGGTGTTCCAAATCCAAATCCATAAGTTTTTATATAGTTATTGTTCTGTCCCTCATTGCTTTCGTTCTTATCGGGTCTCTCATTTGGGTAGTCAAATTTAAGATGAATCTCTTCAAGAAATCAAAATCTTCATGGATGGTGACTAAGTTCCAACGTGTTGGATTTGATGAAGAAGATGTAATTCCTCATTTAACCAAAGCAAATATTATTGGATCAGGCGGGTCAAGCACTGTGTTCAAGGTGGACCTAAAAATGGGGCAAACTGTCGCCGTGAAGAGTCTTTGGAGTGGCCACAACAAATTGGATTTGGAATCGATTTTCCAATCAGAAGTTGAGACACTAGGTCGGATTCGCCATGCCAATATTGTGAAGTTGCTCTTCAGTTGCAGCAATGGTGAAGGAAGTAAAATTCTTGTTTACGAATACATGGAGAATGGAAGTTTGGGAGATGCTCTACATGAACACAAATCCCAAACTTTATCTGATTGGTCCAAACGACTTGACATCGCTATTGGAGCAGCTCAAGGATTAGCTTACTTACACCATGATTGCGTTCCTCCAATAATCCATCGTGATGTTAAGAGCAACAACATTCTCTTGGATGAAGAATTCCACCCACGAGTGGCTGACTTTGGTTTAGCGAAGACGATGCAGCGCCAAGGAGAGGCAGAAGATGGCAATGTCATGTCTCGTATTGCTGGCTCCTATGGTTACATTGCTCCTGAGTATGGGTATACAATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTGGTGTTGATGGAATTAGTGACAGGGAAGCGACCGAATGATGCATGCTTTGGAGAGAACAAAGATATTGTGAAATGGATGACAGAGATTTCATTGTCAGAATGCGATGAAGAGAATGGGTTAAGTTTAGAGGAGATTGTTGATGAAAAGTTGGACCCAAAGACATGTGTAGTAGAAGAGATAGTGAAGATTTTGGATGTGGCAATTCTTTGTACCTCTGCTTTGCCTCTCAATAGACCATCAATGCGAAGAGTGGTTGAGCTGTTAAAGGACACCAAATTGCCTCATTCCAAGTCGTGA 2949 42.25 MPFFNLHPSSPFLLLFFFFFFHLPAFAILSDRDYDILIRVKTSYLHDPNGSINNWVPNQAHNACNWTGITCDSTNSSILSIDLSNSGFVGGFPFVFCRIPTLKSLSISNTNLNGTLLSPSFSLCSHLQLLNLSNNLLVGNLPDFSSGFKQLQTLDLSANNFTGEIPHSIGGLSALKVLRLTQNLLDGSLPSVLGNLSELTEMAIAYNPFKPGPLPPEIGNLTKLVNMFLPSSKLIGPLPDSIGNLALLTNLDLSANSISGPIPYSIGGLRSIKSIRLYNNQISGELPESIGNLTTLFSLDLSQNSLTGKLSEKIAALPLQSLHLNDNFLEGEVPETLASNKNLLSLKLFNNSFSGKLPWNLGLTSYLNLFDVSSNNFMGEIPKFLCHGNQLQRIVLFNNHFSGSFPEAYGGCDSLLYVRIENNQLSGQIPDSFWNLSRLTYIRISENRFEGSIPLAISGIRYLQDLVISGNFFSGQLPKEICKLRDLVRLDVSRNKFSGGVPSCITELKQLQKLDLQENMFTREIPKLVNTWKELTELNLSHNQFTGEIPPQLGDLPVLKYLDLSSNLLSGEIPEELTKLKLGQFNFSDNKLTGEVPSGFDNELFVNSLMGNPGLCSPDLKPLNRCSKSKSISFYIVIVLSLIAFVLIGSLIWVVKFKMNLFKKSKSSWMVTKFQRVGFDEEDVIPHLTKANIIGSGGSSTVFKVDLKMGQTVAVKSLWSGHNKLDLESIFQSEVETLGRIRHANIVKLLFSCSNGEGSKILVYEYMENGSLGDALHEHKSQTLSDWSKRLDIAIGAAQGLAYLHHDCVPPIIHRDVKSNNILLDEEFHPRVADFGLAKTMQRQGEAEDGNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFGENKDIVKWMTEISLSECDEENGLSLEEIVDEKLDPKTCVVEEIVKILDVAILCTSALPLNRPSMRRVVELLKDTKLPHSKS* 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6319874 6323337 + CsaV3_3G007020.1 Csa03g00702 521607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00702 982 Pfam Leucine Rich repeats (2 copies) 534 573 IPR025875 -
Csa03g00702 982 SMART serkin_6 688 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00702 982 ProSitePatterns Protein kinases ATP-binding region signature. 694 716 IPR017441 GO:0005524
Csa03g00702 982 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Csa03g00702 982 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
Csa03g00702 982 SMART LRR_typ_2 556 580 IPR003591 -
Csa03g00702 982 SMART LRR_typ_2 148 171 IPR003591 -
Csa03g00702 982 SMART LRR_typ_2 172 196 IPR003591 -
Csa03g00702 982 SMART LRR_typ_2 508 532 IPR003591 -
Csa03g00702 982 SMART LRR_typ_2 269 293 IPR003591 -
Csa03g00702 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Csa03g00702 982 Gene3D Ribonuclease Inhibitor 317 634 IPR032675 -
Csa03g00702 982 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Csa03g00702 982 Gene3D Ribonuclease Inhibitor 212 316 IPR032675 -
Csa03g00702 982 SUPERFAMILY L domain-like 381 622 - -
Csa03g00702 982 Gene3D Phosphorylase Kinase; domain 1 662 766 - -
Csa03g00702 982 SUPERFAMILY Protein kinase-like (PK-like) 681 972 IPR011009 -
Csa03g00702 982 Pfam Leucine rich repeat 150 208 IPR001611 GO:0005515
Csa03g00702 982 Pfam Leucine rich repeat 390 449 IPR001611 GO:0005515
Csa03g00702 982 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Csa03g00702 982 SUPERFAMILY L domain-like 62 361 - -
Csa03g00702 982 Pfam Protein kinase domain 690 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00702 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 12 977 - -
Csa03g00702 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 977 - -
Csa03g00702 982 ProSiteProfiles Protein kinase domain profile. 688 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02250 Csa-Chr2:20181979 Csa03g00702 Csa-Chr3:6319874 0 dispersed
Csa03g00702 Csa-Chr3:6319874 Csa07g00312 Csa-Chr7:2331519 0 dispersed
Csa07g00651 Csa-Chr7:4672994 Csa03g00702 Csa-Chr3:6319874 0 dispersed
Csa03g00702 Csa-Chr3:6319874 Csa01g01260 Csa-Chr1:7844689 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77962 PF00069 Pkinase 9.60E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00702 - - csv:101219140 1875.52