Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00716 ATGGAAACTGGAACCCAGACCCAAAGATCATCAGGGAGAGGGGAGGATTATGAAGTTCAAGTGTCGTTCCACCTCTCAAATGATCCACACCACATCCACGAAATGGGATTTGTGCAGTTGGAAGAGCACAGCCAGGTTTTGAGCTTCTTGGCACCCAACAACAACAACAACACCACCAATATGCCACCTCCTCCCTTTACTACTACTTCTCCTCACTCCAACATCCTCCCTCGACCACCTTCTTGGACTAATCACCAGCTGCCCGGAACACTGGATCCCAAGCCCGGTAACGATGAAAACTGCACGGCTACTGCTACTGATGCCACCAATTCATGGTGGAGAAACACAAACGCCGATAAGAGTAAGGTGAAGGTAAGGAGAAAGCTGAGAGAGCCACGTTTCTGTTTTCAGACAAGAAGCGATGTTGATGTGCTGGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTAGAGCGACTGTCGGAGGATTGCCGGATGGTAATAACCACTTACGAAGGTAGACACAACCACACTCCTTGTGATGACTCCAATTCTTCGGAGCACGAACCCTTTACATCCTTCTGA 660 48.33 METGTQTQRSSGRGEDYEVQVSFHLSNDPHHIHEMGFVQLEEHSQVLSFLAPNNNNNTTNMPPPPFTTTSPHSNILPRPPSWTNHQLPGTLDPKPGNDENCTATATDATNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHTPCDDSNSSEHEPFTSF* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6430612 6433611 + CsaV3_3G007160.1 Csa03g00716 521621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00716 219 ProSiteProfiles WRKY domain profile. 140 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00716 219 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00716 219 MobiDBLite consensus disorder prediction 200 219 - -
Csa03g00716 219 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 215 IPR044810 GO:0003700
Csa03g00716 219 SMART WRKY_cls 145 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00716 219 Gene3D WRKY domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00716 219 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 24 215 - -
Csa03g00716 219 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00716 Csa-Chr3:6430612 Csa06g02834 Csa-Chr6:24728797 6.22E-45 dispersed
Csa03g00716 Csa-Chr3:6430612 Csa02g01560 Csa-Chr2:14764150 5.92E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31128 PF03106 WRKY 1.70E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00716 - - csv:101216931 447.973