Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00720 ATGAAGAGGATTCCAGAGTCAAAAGCACTACCATTATTTCTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCAGGAAAATTTTGTGTTTTGGATGATATACCGAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTTGGAAGATCAATTGGGCAAGGATTTCAAGATTCAGAAATTTCTGTACCTGTACGGACATCGAAGGGAAAATCCTCTTTTTTGGGGCAGGAAGACGCTAAGCGTGATGTCACTTTAAAGGGTAGTAGCTCTTTGATTGAGGAGGGTGGTCCAAGTTCCTTCTCTGGGGCCAGCCACCCGCCAGAGCCCGTTGATATGGATCTAATGAGAACTGTTTATGTACCCATTGGGCAAAATAAGCCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTAAAGGGCCCTTTTCTGGAAGATCTTTCAATCAGGGTTCCACCCAAGAAACCAAGCCCTGCTGTTCTCTCTCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCCTTTTCAATTCCTCGTGCATCACAAAATACAGAAACTTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGCGTTTGGGATGCTTCTTTGCCACCAAGTGGCAATGTAAGTCCACACAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACTTATCGAAGTGATGGAATGGTTAGTATTGAACGGAACTGTGAGAGTGCAAAAGGAAGCATGAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTGTTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGACGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCGAGGTGGAAAGCCATCCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGTTGTGGTGATATTGGCAGTGTTTATCTCTCAGAGCTAAGTGGAACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAAACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAAACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCGGGGAAACACTTCTCTGAGTATGCTGCGAGGTTCTATGCTGCTGAGGTTTTACTGGCTCTCGAATATCTTCACATGCTTGGAGTGGTCTATAGGGACTTAAAACCGGAGAATGTATTGGTTCGCGATGATGGCCACATAATGCTCTCGGATTTCGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAAACTTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATTTTGGGTTGCAATCCAGTACTCTTCCTGAGCTGGTAGCAGAGCCTACTGCCGCCCGCTCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAGACCCCCTTCAAGGGATCGGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAGCTGAAGTTCCCAGAGTCTCCGGCAACTAGTTATGCCAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCCCAGCATCGACTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACACCCCCAGAAGTGCCAAGACCAATGGAGGCCGAACTGCCCAAGTTTGGGGTAGTTGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2184 46.47 MKRIPESKALPLFLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEISVPVRTSKGKSSFLGQEDAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDFGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF* 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6442047 6448009 - CsaV3_3G007200.1 Csa03g00720 521625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00720 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Csa03g00720 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Csa03g00720 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00720 727 Pfam Protein kinase domain 544 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00720 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00720 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Csa03g00720 727 MobiDBLite consensus disorder prediction 276 308 - -
Csa03g00720 727 SMART serkin_6 335 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00720 727 MobiDBLite consensus disorder prediction 191 214 - -
Csa03g00720 727 PANTHER FLIPPASE KINASE 1-RELATED 46 727 - -
Csa03g00720 727 MobiDBLite consensus disorder prediction 193 207 - -
Csa03g00720 727 Gene3D Transferase(Phosphotransferase) domain 1 544 684 - -
Csa03g00720 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Csa03g00720 727 MobiDBLite consensus disorder prediction 266 312 - -
Csa03g00720 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 46 727 - -
Csa03g00720 727 MobiDBLite consensus disorder prediction 102 121 - -
Csa03g00720 727 CDD STKc_phototropin_like 333 686 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00720 Csa-Chr3:6442047 Csa03g03977 Csa-Chr3:34781972 0 dispersed
Csa03g00720 Csa-Chr3:6442047 Csa01g01551 Csa-Chr1:11109475 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77963 PF00069 Pkinase 5.40E-36 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00720 - - csv:101217551 1429.85