Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00720 | ATGAAGAGGATTCCAGAGTCAAAAGCACTACCATTATTTCTGCCCATAGAGATGCTTCCAGAATCAAATGTACTTCCAGGAAAATTTTGTGTTTTGGATGATATACCGAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCACTGGTCGAACATGCACTCAGCTAAGGTAAGAGACGTTGGAAGATCAATTGGGCAAGGATTTCAAGATTCAGAAATTTCTGTACCTGTACGGACATCGAAGGGAAAATCCTCTTTTTTGGGGCAGGAAGACGCTAAGCGTGATGTCACTTTAAAGGGTAGTAGCTCTTTGATTGAGGAGGGTGGTCCAAGTTCCTTCTCTGGGGCCAGCCACCCGCCAGAGCCCGTTGATATGGATCTAATGAGAACTGTTTATGTACCCATTGGGCAAAATAAGCCTGATCCTGGCTGCTTGATGAAGAGTTTTTCCGTAAAGGGCCCTTTTCTGGAAGATCTTTCAATCAGGGTTCCACCCAAGAAACCAAGCCCTGCTGTTCTCTCTCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTTCCCCCTTTTCAATTCCTCGTGCATCACAAAATACAGAAACTTCTCTACTTCCCCCAGATTCTGAGGAGAAGGAATGCGTTTGGGATGCTTCTTTGCCACCAAGTGGCAATGTAAGTCCACACAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTTAATAGTTGTGCTAGCACTTATCGAAGTGATGGAATGGTTAGTATTGAACGGAACTGTGAGAGTGCAAAAGGAAGCATGAGAGGGGACTCTCTCGAGAGTGCAAAAACAAGTGTTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGACGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCGAGGTGGAAAGCCATCCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGCCATTTTAGACTGCTGAAAAGACTTGGTTGTGGTGATATTGGCAGTGTTTATCTCTCAGAGCTAAGTGGAACGCGCTGTTATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATAAGGAAGAAGTTAACGAGAGCTCAAACAGAAAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACTTTGTACACCCATTTTGAAACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAACCGGGGAAACACTTCTCTGAGTATGCTGCGAGGTTCTATGCTGCTGAGGTTTTACTGGCTCTCGAATATCTTCACATGCTTGGAGTGGTCTATAGGGACTTAAAACCGGAGAATGTATTGGTTCGCGATGATGGCCACATAATGCTCTCGGATTTCGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAAACTTCATACGATTCTGACCCATCAAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATTGAGCCATCATCAGTTTGCATCCAACCTGCATGTTTTATTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGATTTTGGGTTGCAATCCAGTACTCTTCCTGAGCTGGTAGCAGAGCCTACTGCCGCCCGCTCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATCAAAGGAGAGGGTCATGGAAGTGCTGTTGACTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAGACCCCCTTCAAGGGATCGGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAGCTGAAGTTCCCAGAGTCTCCGGCAACTAGTTATGCCAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCCCAGCATCGACTCGGAGTGAAGAGGGGAGCAACGGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACACCCCCAGAAGTGCCAAGACCAATGGAGGCCGAACTGCCCAAGTTTGGGGTAGTTGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTAGGTACAGATGTTGTTAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA | 2184 | 46.47 | MKRIPESKALPLFLPIEMLPESNVLPGKFCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGFQDSEISVPVRTSKGKSSFLGQEDAKRDVTLKGSSSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPGCLMKSFSVKGPFLEDLSIRVPPKKPSPAVLSPAESLVDEPHDLGVLSSPFSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESAKGSMRGDSLESAKTSVSRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFIPRLFPQKSKKKSPKPRSDFGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKSGGQYLDFEFF* | 728 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6442047 | 6448009 | - | CsaV3_3G007200.1 | Csa03g00720 | 521625 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00720 | 727 | SUPERFAMILY | Protein kinase-like (PK-like) | 317 | 691 | IPR011009 | - | |
Csa03g00720 | 727 | Gene3D | Phosphorylase Kinase; domain 1 | 333 | 418 | - | - | |
Csa03g00720 | 727 | ProSiteProfiles | Protein kinase domain profile. | 335 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00720 | 727 | Pfam | Protein kinase domain | 544 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00720 | 727 | Pfam | Protein kinase domain | 336 | 486 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00720 | 727 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 456 | 468 | IPR008271 | GO:0004672|GO:0006468 | |
Csa03g00720 | 727 | MobiDBLite | consensus disorder prediction | 276 | 308 | - | - | |
Csa03g00720 | 727 | SMART | serkin_6 | 335 | 667 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa03g00720 | 727 | MobiDBLite | consensus disorder prediction | 191 | 214 | - | - | |
Csa03g00720 | 727 | PANTHER | FLIPPASE KINASE 1-RELATED | 46 | 727 | - | - | |
Csa03g00720 | 727 | MobiDBLite | consensus disorder prediction | 193 | 207 | - | - | |
Csa03g00720 | 727 | Gene3D | Transferase(Phosphotransferase) domain 1 | 544 | 684 | - | - | |
Csa03g00720 | 727 | Gene3D | Transferase(Phosphotransferase) domain 1 | 419 | 490 | - | - | |
Csa03g00720 | 727 | MobiDBLite | consensus disorder prediction | 266 | 312 | - | - | |
Csa03g00720 | 727 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 46 | 727 | - | - | |
Csa03g00720 | 727 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
Csa03g00720 | 727 | CDD | STKc_phototropin_like | 333 | 686 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00720 | Csa-Chr3:6442047 | Csa03g03977 | Csa-Chr3:34781972 | 0 | dispersed | |
Csa03g00720 | Csa-Chr3:6442047 | Csa01g01551 | Csa-Chr1:11109475 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77963 | PF00069 | Pkinase | 5.40E-36 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00720 | - | - | csv:101217551 | 1429.85 |