Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00739 ATGACACATTTTCTTTTCTTTGCTGCCCTTATCATCTCTCTTTCACTTGCCCCCCCTTCCTTTTGCTTCCATCCCAAATCCTTTAACGTCTCCAAGTATCAGTCCGATGACTCTGATTGGTCCCCCGCCGTCGCCACTTGGTACGGTCCTCCTGATGGTGCTGGGAGTGATGGAGGCTCATGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCGTCGTTTATTGCGGCGGGAGGCCCTTCTTTGTACAAATATGGCCAAGCCTGTGGAGCTTGTTATCAGGTGAAATGCTCTGGAGAAGGCGCATGCTCAGGGAATCCAGTGACAGTGGTTATAACTGATAGTTGTCCCGGTGGATCCTGTGCTTCCGACTCCGTCCACTTTGACCTAAGTGGCACTGCTTTTGGTGCTATGGCTGCTACTGGTCGGGCAGAAGAACTACGCAGTCTCGGTGTTTTGCACATTCAACATAAAAGGGTGGAATGCAATTATCCAGGAACGTCGATCAATTTCATCGTTGACTCGGGGTCGAACTCGAACTATTTTGCAGCTCTGATCGAGTATGAGGATGGAGATGGGGAACTTGGTTCAGTGGAGCTGAAACAGGGGGCCGTGGACTCAAACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCCGGCTCAGCACTTCAAGCACCCTTCTCCCTCAGGCTTACTGCCCTCGACTCCGGCAAGACTGTGGTTGCTAACAACGTAATTCCAGCTGGGTGGCAAGCAGGGAAGAGTTATAGATCAGTAGTCAACTTTGATCCACTTAAATAA 822 50.49 MTHFLFFAALIISLSLAPPSFCFHPKSFNVSKYQSDDSDWSPAVATWYGPPDGAGSDGGSCGYGKAVEQPPFSSFIAAGGPSLYKYGQACGACYQVKCSGEGACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRAEELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNSNYFAALIEYEDGDGELGSVELKQGAVDSNSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKTVVANNVIPAGWQAGKSYRSVVNFDPLK* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6584510 6586263 - CsaV3_3G007390.1 Csa03g00739 521644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00739 273 SMART dpbb_1 76 158 IPR007112 -
Csa03g00739 273 Pfam Lytic transglycolase 77 153 IPR009009 -
Csa03g00739 273 SUPERFAMILY PHL pollen allergen 169 265 IPR036749 -
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Csa03g00739 273 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Csa03g00739 273 Gene3D - 165 269 IPR036749 -
Csa03g00739 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 168 IPR007112 -
Csa03g00739 273 PANTHER EXPANSIN-B2-RELATED 2 270 - -
Csa03g00739 273 SUPERFAMILY Barwin-like endoglucanases 39 188 IPR036908 -
Csa03g00739 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 265 IPR007117 -
Csa03g00739 273 Pfam Expansin C-terminal domain 170 254 IPR007117 -
Csa03g00739 273 PANTHER EXPANSIN-B3 2 270 - -
Csa03g00739 273 Gene3D - 26 164 IPR036908 -
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 118 133 IPR005795 GO:0005576|GO:0019953
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Csa03g00739 273 PRINTS Major pollen allergen Lol pI signature 220 237 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00739 Csa-Chr3:6584510 Csa06g01104 Csa-Chr6:9119830 3.88E-75 dispersed
Csa03g00739 Csa-Chr3:6584510 Csa07g00436 Csa-Chr7:3137269 2.67E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00739 - - csv:101219528 549.28