Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00749 ATGGAACCAATTTTCAATTATATTGAAGCATCTGATGCTAAAGCAAACTCCTTTTCTCACTCTCCCTCTATCACAACCCATCATGAATACCAACAAGTTTCTCACAACACAAAACAGACCACGACTATTCAACAAAACAGACACCACCCTATGTTCAGAGGAGTTCGTAAACGAAATTGGGGAAAATGGGTCTCTGAGATTCGCGAGCCAAGGAAGAAGACAAGAATTTGGCTTGGAACATACCCAACACCCGAAATGGCAGCTCGAGCCCATGACGCCGCAGCCCTCGCCATTAAAGGTCGCTCTGCTTTTCTAAACTTCCCCGAACTGGCCCAATTCCTTCCTCGCCCGCTTTCCAGGTCCCATAAGGACATTCAGGCTGCCGCGGCACAGGCAGCGGCTGCCACATTTTCTGCCGGAATCAACGCTGAAAGTGGAGGAGAGGAAGCGGTGGAGGAGAGCAGGGAGGCTCTGTTTCCTGGAAGCGATGGGGGGGAGAGAACAGAGGATTCCACAAACTCAACGTCGACGGTGGCCGGTGATGAGACATTGTTCGATTTGCCTGATTTGGTCATGGGTAGTTCTGATTTAAAAGATGGGTTTGTTTATCATTCTTCGTTGTGGCAGTTTTGTGCGGCGGCCGATCATAATGGTTATCGGCTGGAAGAGCCTTCGTTCTGGGAACTCATTTAA 693 49.21 MEPIFNYIEASDAKANSFSHSPSITTHHEYQQVSHNTKQTTTIQQNRHHPMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDAAALAIKGRSAFLNFPELAQFLPRPLSRSHKDIQAAAAQAAAATFSAGINAESGGEEAVEESREALFPGSDGGERTEDSTNSTSTVAGDETLFDLPDLVMGSSDLKDGFVYHSSLWQFCAAADHNGYRLEEPSFWELI* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6659341 6660586 - CsaV3_3G007490.1 Csa03g00749 521654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00749 230 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 PANTHER ETHYLENE RESPONSE FACTOR 31 228 - -
Csa03g00749 230 MobiDBLite consensus disorder prediction 158 179 - -
Csa03g00749 230 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Csa03g00749 230 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Csa03g00749 230 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Csa03g00749 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00749 Csa-Chr3:6659341 Csa01g02038 Csa-Chr1:17372663 1.04E-37 dispersed
Csa03g00749 Csa-Chr3:6659341 Csa02g00103 Csa-Chr2:717915 1.12E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31135 PF00847 AP2 1.10E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00749 - - csv:101202887 451.055