Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00756 ATGGGCGGGAGAGATGATGACGTGGGACTCACTTTGAGTTTAGGTTTTGGTGTTACGACTCAGTCCACTCACATGCAAAGGCCGTCGTCGATGCATAATCACCACCTCCGCAAGACTCATTGGAACGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGAGGAATCGACGTGAATCGGTTGCCGACGGGCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCTAGCATTAGTGGAAAGAGAAGCGAGAGAGAAGCGGCTGGAGACGAGGCGGAGGCGGAGGCTGAGGCGGAGGCTGAAGCGGAAGCGGAAGCGGAAGCCGAAAGAGCCTCGTGCTCGCGAGGGAGTGATGATGAAGACGGCGGAGGCGGGGACGGTGACGCGTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCAATGGTTCTTGAAGAGACGTTCAAAGAGCACAATACGCTGAATCCTAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGGAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTTTATATGCACATGAATCCTCCTACCACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCATCTTCTTCGACCTCAGCTGCTACCACCACTCGCCATCAAGCAGCAGCTGGTGTGCAGCGTCCCTCTATGGCCATCAACCCGTGGGCAGTGTTGCCGATTCAACGTTGA 885 52.43 MGGRDDDVGLTLSLGFGVTTQSTHMQRPSSMHNHHLRKTHWNELFQFSDRNADSRSFLRGIDVNRLPTGVDGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATTTRHQAAAGVQRPSMAINPWAVLPIQR* 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6687287 6690357 + CsaV3_3G007560.1 Csa03g00756 521661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00756 294 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Csa03g00756 294 Gene3D - 134 202 - -
Csa03g00756 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 2 290 - -
Csa03g00756 294 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Csa03g00756 294 Coils Coil 203 233 - -
Csa03g00756 294 MobiDBLite consensus disorder prediction 75 91 - -
Csa03g00756 294 MobiDBLite consensus disorder prediction 100 114 - -
Csa03g00756 294 SUPERFAMILY Homeodomain-like 127 198 IPR009057 -
Csa03g00756 294 CDD homeodomain 141 198 IPR001356 GO:0003677
Csa03g00756 294 MobiDBLite consensus disorder prediction 65 142 - -
Csa03g00756 294 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Csa03g00756 294 Coils Coil 99 121 - -
Csa03g00756 294 PANTHER - 2 290 - -
Csa03g00756 294 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Csa03g00756 294 MobiDBLite consensus disorder prediction 115 142 - -
Csa03g00756 294 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Csa03g00756 294 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Csa03g00756 294 SMART HOX_1 139 201 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00756 Csa06g00648 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00250 Csa-Chr3:2009009 Csa03g00756 Csa-Chr3:6687287 1.41E-08 dispersed
Csa03g00254 Csa-Chr3:2030176 Csa03g00756 Csa-Chr3:6687287 3.20E-89 dispersed
Csa03g00756 Csa-Chr3:6687287 Csa03g03564 Csa-Chr3:31859666 3.75E-66 dispersed
Csa03g00756 Csa-Chr3:6687287 Csa07g02054 Csa-Chr7:19866731 5.42E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31136 PF04618 HD-ZIP_N 2.90E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00756 K09338 - csv:101222132 491.886