Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00767 ATGAACGTCAAATCCCCGCCGACGAGGACTCGTGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGAACTTTTGCTAAGGTCAAGTTCGCGAAAAACGTCGAGAATGGTGATTATGTCGCCATTAAGATTCTCGACCGGGAAAAAGCTCTTCGCCACCGGATGGTCGAACAGATCAAAAGAGAGATTTCGACTCTCAAAGTGATCAAGCATCCAAACGTTTGTAAGATTTATGAGGTTATGGCAAGCAAATCAAAGATCTACATTGTTCTTGAGTATGCGGATGGAGGCGAGCTTTTTGACAAGATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGATTCACATGATGTTCTTAAAGTGTCAGATTTCGGATTGAGTGCATTCTCGCAGCAAGTACGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACTCCAAACTACGTAGCTCCTGAGGTCCTCAATGATAAAGGTTATGACGGTTCATCTTCTGATCTTTGGTCATGCGGGGTCATTCTCTTTGTTCTTATGGCTGGTTTCTTGCCTTTTGACGAGCCAAATCTAATGTGTTTGTACAGAAAAATTTCAAAGGCTGATTTTGCCTTTCCATCGTGGTTCTCAAGTGGTGCAAAAAATCTAGTTCGCCGCATTCTTGACCCAGACCCTACTACTCGAATATCAATAGCAGAAATTCAAGAAGATCCATGGTTCAAGAAAGACTACACACCTGCTCATTTTGAAGTGGAGGAGGATATAACTCTTGATGATGTAGATGCTGCTTTTAGCAGCTCGAAGGAACATCTAGTTACCGAACGAAAAGAGAAGCCAGTGTCCATGAATGCTTTCGAGCTTATCTCTAGGTCACCTGGTTTTAGTCTTGAAAATCTATTCGAGAGGCAGAAGACTGTTGCAAAGAGAGAAACTCGTTTTACTTCGCAAAGCCCTGCAAACGAAATCATGTCAAAGATTGAAGAAACTGCAAAACCGATGGGTTTCAATGTACGAAAGCGGGACTACAAGATGAAGTTGCAAGGGGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTCTTTGAAGTGGCTCCTTCCCTGCATATGGTGGAGCTTCGGAAAACAGGGGGCGACACGCTCGAGTTTCACAAGTTCTATAAGAGTTTCTCATCCGGATTAAAAGACATAGTGTGGAGAACTGATGAAAATACCGTAGAAGGAAGCTGA 1326 44.12 MNVKSPPTRTRVGKYELGKTLGEGTFAKVKFAKNVENGDYVAIKILDREKALRHRMVEQIKREISTLKVIKHPNVCKIYEVMASKSKIYIVLEYADGGELFDKIAAKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVLNDKGYDGSSSDLWSCGVILFVLMAGFLPFDEPNLMCLYRKISKADFAFPSWFSSGAKNLVRRILDPDPTTRISIAEIQEDPWFKKDYTPAHFEVEEDITLDDVDAAFSSSKEHLVTERKEKPVSMNAFELISRSPGFSLENLFERQKTVAKRETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLKDIVWRTDENTVEGS* 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6741087 6747423 - CsaV3_3G007670.1 Csa03g00767 521672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00767 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Csa03g00767 441 SUPERFAMILY Protein kinase-like (PK-like) 12 304 IPR011009 -
Csa03g00767 441 CDD STKc_SnRK3 14 269 - -
Csa03g00767 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00767 441 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 8 434 - -
Csa03g00767 441 Gene3D Kinase associated domain 1, KA1 306 432 - -
Csa03g00767 441 CDD CIPK_C 313 428 - -
Csa03g00767 441 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00767 441 Pfam NAF domain 309 369 IPR004041 GO:0007165
Csa03g00767 441 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Csa03g00767 441 PANTHER - 8 434 - -
Csa03g00767 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Csa03g00767 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Csa03g00767 441 Gene3D Transferase(Phosphotransferase) domain 1 95 277 - -
Csa03g00767 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00767 Csa-Chr3:6741087 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa06g00024 Csa-Chr6:162738 Csa03g00767 Csa-Chr3:6741087 3.54E-153 dispersed
Csa03g00767 Csa-Chr3:6741087 Csa01g02318 Csa-Chr1:20282952 7.13E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77964 PF00069 Pkinase 3.30E-73 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00767 - - csv:101203531 887.871