Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00786 ATGGAGTCTCCTGATAATGCTGCTGAAAAAGATCCTACCGGTCGATACGTTCGGTACGATGAAATCCTGGGAAGGGGCGCTTTCAAGACAGTTTACAAGGCATTCGACGAAGTGGATGGAATTGAAGTTGCCTGGAATCAAGTTAGGATTGATGGTTTCTTGCAATCACCTGAGGATTTGGAAAAGTTGTACTCTGAAGTACATCTACTTAAATCATTAAAACATGAGAATATTATCAAGTTCTATAATTCTTGGGTGGATGATAAGAAGAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATATCGTAAAAAGCATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCGCGACAGATTCTCCGAGGGTTGGTTTATCTTCACAGTCATGATCCTCCCATTATTCATAGAGATTTGAAAGGCGATAACATTTTTATTAATGGAAATCATGGAGAAGTTAAAATTGGAGATCTTGGATTAGCAATTGTTATGCAGCAGCCTACCGCTCGTAGTGTAATTGGAACTCCTGAGTTCATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGGATGTGCATGCTGGAGATGGTGACCTTTGAGTATCCATATAGTGAATGTAAAAATCCAGCTCAGATCTTTAGGAAAGTTACATCTGGTATTAAACCTGCTTCCCTTGCTAAGGTGAGTGATCCACGGACCATGGAATTCATCAATAAATGTTTGGTTCCAGTGCACGAGAGGTTGTCTGCAAAAGAGCTTCTTAAAGACTCGTTCCTTCAAGTTGAGAACCCAAAGGAATCGGCACGCAATCCCCTACAGCTATCTAATCAGGTTTCTAAATCAATAAATTTGCCCAAGAGTGGACCTATTTCCATGGACATTGACATTGACCAAAAAATACATTCTTTAAGCACTTATGCTGAAAGCAATAGCGGGAGTCCACGCTTTCCAGTCGTGGAATTCCAGACAATGAATAAGAACAATGAGTTCAGGTTACGTGGAAATAAGAATGACGATAACTCTGTGGCATTAACTCTGCGTATTGCAGACTCAAATGGTCGAGTGAGGAATATACATTTTACGTTTTATCTCGATTCTGATACTGCATTGTCAGTTGCTGCTGAAATGGCTGAACAGTTGGAGTTGATAAATCATGATGTGGATTTCATAGCTGAATTTATTGATTTTTTGATAACAAAGCTTATACCTGAATGGAAGCCCTTGTCTGTTTATTCCTCAAATGGAGAATTGAGTCTTTTCAGCGCCCCCCCTTTCCTTAAAAGTGCTAAATCATCTATAGGATCTGCTTGGGGTTCAATCTTAACTGGGAGTCATGATGGATTGGTCGCACAAGACATTTCTTCTGGGTTGGGGTGTGGTACTCAAAAGGATTGTCTGCAATCTGAAGAAGATGGCTGGACTACTGATATTTCCGCTGGTCACATTTTTGATACTTGCCCTTCTTCACCTAGTTTGGCTAATTTTGAGGACTTGAATTCACATGCTTCATTTGCGTTGGAGTTACTGGTCGACGATTGCTCTACCAAAAGTGCTAAGGTGTTTGATTGTTCCAATATCGATGGAAGTTCAAAAGGCTCGAGCTGGTCGATTGCAGAACTAGAGCACCACGGTTCATCATATGTTGTTGAAGACAAATTTCAAAGAAATGTTGGTGATGTTGGAATCTTCACTCCCATGGATTATTTTGCGAAGAACTCGGTGGTGTCAATGCCTGCTCCAAGTGAAGCATCTAATGTGATGAGCTTGACAAGCAGTTGCTCTTCGTTATCGTTAACAGACAAGGATCTCGATGCTGAACTGAAGATGGAAATCGATGCTATCGAGACACATTATCGGCAACTGTTTGATGAGCTTTCTCGAATGAGAGAGGAGGCACTAGAGGCCACCAGAAGGAGATGGATTGCAAAGAAGAAACTGATTCATTGA 1992 40.91 MESPDNAAEKDPTGRYVRYDEILGRGAFKTVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKKKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQILRGLVYLHSHDPPIIHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECKNPAQIFRKVTSGIKPASLAKVSDPRTMEFINKCLVPVHERLSAKELLKDSFLQVENPKESARNPLQLSNQVSKSINLPKSGPISMDIDIDQKIHSLSTYAESNSGSPRFPVVEFQTMNKNNEFRLRGNKNDDNSVALTLRIADSNGRVRNIHFTFYLDSDTALSVAAEMAEQLELINHDVDFIAEFIDFLITKLIPEWKPLSVYSSNGELSLFSAPPFLKSAKSSIGSAWGSILTGSHDGLVAQDISSGLGCGTQKDCLQSEEDGWTTDISAGHIFDTCPSSPSLANFEDLNSHASFALELLVDDCSTKSAKVFDCSNIDGSSKGSSWSIAELEHHGSSYVVEDKFQRNVGDVGIFTPMDYFAKNSVVSMPAPSEASNVMSLTSSCSSLSLTDKDLDAELKMEIDAIETHYRQLFDELSRMREEALEATRRRWIAKKKLIH* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6838790 6843081 - CsaV3_3G007860.1 Csa03g00786 521691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00786 663 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00786 663 Gene3D - 355 425 - -
Csa03g00786 663 CDD STKc_WNK 15 274 - -
Csa03g00786 663 SMART serkin_6 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00786 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 661 - -
Csa03g00786 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Csa03g00786 663 PANTHER KINASE DOMAIN PROTEIN 2 661 - -
Csa03g00786 663 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Csa03g00786 663 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
Csa03g00786 663 SUPERFAMILY Protein kinase-like (PK-like) 19 275 IPR011009 -
Csa03g00786 663 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 412 IPR024678 GO:0004674|GO:0005524
Csa03g00786 663 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00786 663 Coils Coil 626 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00786 Csa-Chr3:6838790 Csa05g00176 Csa-Chr5:1012906 0 dispersed
Csa03g00786 Csa-Chr3:6838790 Csa03g00442 Csa-Chr3:3747292 5.90E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77965 PF00069 Pkinase 4.10E-53 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00786 K08867 - csv:101204101 1306.2