Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00798 ATGTTTATAGCCTTCCAACTTTCTTTCCCTCTTCCCTTATCTCACCATCTTCTTTTCAGCACATTTCGCATGCCAAGTACCGAGATGAAGATTGAAGATGGGTTGAGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACACGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAATAAGCTGTCGGATCTGGTGGAGAGACCCAACGCTTCTAATTTTAGCTGGAACTATGCAATTTTCTGGCAACTTTCTCATTCTAAATCCGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGATGAAACGGAAGCTACACAGATTCTTAGTCTACAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGAGCACTGCAGAAACTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTACGCTCTTGGATTGGACAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGAGGCCCTGGGAAGTGTTTGGCGTCTGGGAAACATATCTGGAATTTGGATGTGCTTAATTCGCCTTCTGAGTATTGTGTGAGATCATACCTTGCTAAATCTGCGGGAATTCAGACGGTTGTTTTGGTGCCGACTGATGTTGGAGTGGTTGAATTGGGTTCTGTGAGATCCGTGAATGAGAGCCTAGAGTTAGTGCAGTTGATCAGATCATTGTTTTCGTCCCAGCTTTCACTTGACAGAGTGAGGTCGTCAGCAGCGATGTCCATGATAGCTGAAAGAAAAGATGAAAGCACCTCATTTGCGAGTTGGGGAATTGCCGAAAGAGGAGAAGGAGGAGGAGGAGGAGGGATTCCCAAGGTTTTTGGGCAGACTTTGAATTCAGGGAACATGGGTCGTTCTCATTTCCGAGAGAAACTGGCGATCAGGAAGATGGATGAGAGATCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAGTTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCATTCCCCTGCAGAAATTTATGTCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCTAGTCAGTGGAGTCAGAGATGAATTTGGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCGGTAGCAACATCAAGACCTTCTGTGATTAACCGTGTAGGAGCTGATTCAGAACATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGATGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCGAATGGCAGGGAGGAGCCACTAAATCACGTTGAGGCAGAAAGGCAACGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATTTCCAAAATGGACAAAGCTTCACTGCTGGGAGATGCCATTGCTTACATTAACGAACTTCAAGAAAAAGTGAAGGTCATGGAATTTGAACGTGAGAAATCCAGCCTCACCTCAAGCGAGGCAACACCTTCGGAAGGGAACCCAGAAATTGAAACTAAAGATCAATTCCTAGATGTCGACATTGATGTCGAGGCAGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCGCACCCTGCATCAAGAGTTATCAAGGCAATGAGAGATGCTCAGATAAATGTTATTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACGTTTGTCATCAAGTCTCCTGGATCCGAGCAGTTGACGAAGGAAAAGCTGATAGCTGCATTTTCCCAGGACTCAACCTCGTTACATCCTCTACCAACAGTTGGGTAG 1950 45.33 MFIAFQLSFPLPLSHHLLFSTFRMPSTEMKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGDETEATQILSLQLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHIWNLDVLNSPSEYCVRSYLAKSAGIQTVVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMIAERKDESTSFASWGIAERGEGGGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPSLAHVHGLKQGNHSPAEIYVSPTPPVNNNHEQLVSGVRDEFGLNPYQSQKLAQMQIDFSVATSRPSVINRVGADSEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKVMEFEREKSSLTSSEATPSEGNPEIETKDQFLDVDIDVEAAHDEVIVKVSCPLESHPASRVIKAMRDAQINVIDSKLSEANDKVLHTFVIKSPGSEQLTKEKLIAAFSQDSTSLHPLPTVG* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6919411 6921670 + CsaV3_3G007980.1 Csa03g00798 521703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00798 649 Gene3D - 467 539 IPR036638 GO:0046983
Csa03g00798 649 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 80 268 IPR025610 -
Csa03g00798 649 PANTHER MYC 41 643 IPR045084 GO:0003700|GO:0006355
Csa03g00798 649 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Csa03g00798 649 CDD bHLH_AtAIB_like 471 544 - -
Csa03g00798 649 MobiDBLite consensus disorder prediction 437 485 - -
Csa03g00798 649 PANTHER TRANSCRIPTION FACTOR MTB1 41 643 - -
Csa03g00798 649 MobiDBLite consensus disorder prediction 440 485 - -
Csa03g00798 649 SMART finulus 480 529 IPR011598 GO:0046983
Csa03g00798 649 MobiDBLite consensus disorder prediction 534 553 - -
Csa03g00798 649 Pfam Helix-loop-helix DNA-binding domain 478 524 IPR011598 GO:0046983
Csa03g00798 649 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 477 537 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00798 Csa-Chr3:6919411 Csa03g02242 Csa-Chr3:19737551 3.77E-102 dispersed
Csa07g01657 Csa-Chr7:17033739 Csa03g00798 Csa-Chr3:6919411 2.22E-10 dispersed
Csa03g00798 Csa-Chr3:6919411 Csa03g00171 Csa-Chr3:1295970 4.32E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31139 PF14215 bHLH-MYC_N 7.50E-54 CL0161 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00798 - - csv:101208845 1210.28