Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00811 ATGTCCAAGTGTATGGGTTCTCAGATGCCAAAATCTGTGAGATTTGGAGGTTACCCATACAAAAGCAGACTGTCTCCAGGGTCAATATTGGAAAGCATAGAGACAAGATTTTCAAGTATTTCTGATTGGTTTAGAAGAATAATTACAATCTTAGGCTTCAAGCATTCAGGTGATCAGTCAGCAAAGAAACCAAAATTTTGGAAGAAAATTCTTGATCCACATAAGCAATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACGTCCCAGTGCTCGATGGAAAAGATCAATGCCTAACCATGGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCATTCATCGACTTATTTTATCTACTCCACATGATCTTTGAATTTCGAACCGGTTATCTCCCCCCATCTTTACCGGTTTTTGGAACTGGTGAATTAATCAAAGATCCAGCAAAAATAGCAAAGAAATATCTTTTCTCAAACTTCTTGATCGATTTCTTATCCATTATCCCATTACCTCAGCTTTTGGTATTAGTAATCATACCTGCAGCGAAAGGCCCTATTCCCTTGAAAACGAAGGATGCCATGAAAATGGCAATTCTTTTGCAATATATTCCAAGACTTCTCCGAATATATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCTTGGAGTGGAGCTGCCTTCAATCTCCTCATTTATATGCTAGCTAGTCATGTAGTTGGTGCCGTTTGGTATTTGTTATCAATAGAACGACAAGCCAAATGCTGGATCCAAGCATGCAAGGAAGATGACATTAACTGTACTGGAGAGTTTTTGTACTGTGGAACTCATAAAAGGAATGCGTACCCATCTATAAACAAGACTTGCTTTCCTAAAGAGTCTGAGGACGGAAAAGACGGCTTTGAGTTTGGGATATATGCTGAAGCCCTTAAGTTTAACTTAACCGATACTATGAGTTTTCGCCGTAAATTCTGCTATTCCTTTTGGTGGGCTCTACGAAATGTTGGCTCTAGTGGACAAAATCTTGAAGTAAGCCATTTCATGGGAGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTATTCGCGTTTCTCATTAGCAATATTCAGAAATATCTGCAGTCAGCAACTGTTAAAATAGAGCAGATGAGAATTAACCGAAGAGATGCTGAGCATTGGATGGCACACCGTATGCTCCCAGACGAGTTGAGGTATCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAATAGAGGAGTTAAGGAAGAGGAACTCATCAGTAACTTTCCTAAAGACCTCAGAAGAGACATCAAACGCCACCTTTGCTTGGCCCATCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAACAACTGTTGGACGCAATGTGCGAATATCTTAGGCCAGTGTTATTCACAGAGAAGAGCTTCATTATGCAAGAGGGTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGATGGCTACCATTATTGGTTGTGATTGGAAAAACGACCTGTACTCGGACACTCTTAATGCTGGCGATTTCTGTGGTGAAGAGCTAGTTCATTGGGCAATGGATCCCACCACTAACCCTTCTTCTCTTCCCATTTCAAAAAGAACAGTTGAAACTCTAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGCTGAAATTTGTAACCAGTCAGTTCCACTCCCAGCAACTCAATAGCAAGTACTTCCAATTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTACAAAATACAAGAAGCTTGGCACGATTACCGCGAAAGAAAGCGGAGGGGGGGTGGAGAAGGTAGATTTCAAGATGCATTGGCTGAAATAGTTGGCCCCTGGACGAGCTTTAACGCCACCCTATATGCATCCATATTCATATCCCATCTACTGCAGGTGGTGCAGAGAAATCCCCAGCACACTCCCCAATTCACACGAGTGATGACTCTACCGCCACCCCCGAAGCCAGAAGATGAGCAAAACAACCCAAACTTCACCATCTTGGATCATTAA 2121 41.54 MSKCMGSQMPKSVRFGGYPYKSRLSPGSILESIETRFSSISDWFRRIITILGFKHSGDQSAKKPKFWKKILDPHKQFLQQWNKIFVLSSVIAVAVDPLFFYVPVLDGKDQCLTMDRQLMIIACVLRSFIDLFYLLHMIFEFRTGYLPPSLPVFGTGELIKDPAKIAKKYLFSNFLIDFLSIIPLPQLLVLVIIPAAKGPIPLKTKDAMKMAILLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMLASHVVGAVWYLLSIERQAKCWIQACKEDDINCTGEFLYCGTHKRNAYPSINKTCFPKESEDGKDGFEFGIYAEALKFNLTDTMSFRRKFCYSFWWALRNVGSSGQNLEVSHFMGEVFFAVFIAILGLVLFAFLISNIQKYLQSATVKIEQMRINRRDAEHWMAHRMLPDELRYRIRRYDQYKWQLNRGVKEEELISNFPKDLRRDIKRHLCLAHLKKVPLFSSMDKQLLDAMCEYLRPVLFTEKSFIMQEGDPIDMMLFIMKGKMATIIGCDWKNDLYSDTLNAGDFCGEELVHWAMDPTTNPSSLPISKRTVETLTEVEAFALKANELKFVTSQFHSQQLNSKYFQFSVRFYSHQWKVWAAYKIQEAWHDYRERKRRGGGEGRFQDALAEIVGPWTSFNATLYASIFISHLLQVVQRNPQHTPQFTRVMTLPPPPKPEDEQNNPNFTILDH* 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6975043 6979332 - CsaV3_3G008110.1 Csa03g00811 521716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00811 706 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
Csa03g00811 706 Gene3D Helix hairpin bin 401 465 - -
Csa03g00811 706 ProSiteProfiles cAMP/cGMP binding motif profile. 474 544 IPR000595 -
Csa03g00811 706 Gene3D - 80 398 - -
Csa03g00811 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 702 - -
Csa03g00811 706 Gene3D Jelly Rolls 472 592 IPR014710 -
Csa03g00811 706 MobiDBLite consensus disorder prediction 685 706 - -
Csa03g00811 706 Pfam Ion transport protein 80 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa03g00811 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 37 702 - -
Csa03g00811 706 SUPERFAMILY cAMP-binding domain-like 404 591 IPR018490 -
Csa03g00811 706 CDD CAP_ED 474 607 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00811 Csa-Chr3:6975043 Csa03g03885 Csa-Chr3:34127090 0 dispersed
Csa03g01916 Csa-Chr3:14901189 Csa03g00811 Csa-Chr3:6975043 8.93E-18 transposed
Csa03g00811 Csa-Chr3:6975043 Csa05g00059 Csa-Chr5:292711 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00811 K05391 - csv:101206492 1431.77