Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00861 | ATGGAAGTCGATTGGGATCTTCATGCCGTCGTCAGAGGTTACTCCGCCGCGCCCTCTGCTGCTACCATTGTTCCCGCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACCCTGTCGTCCCTTTTTCTTTTGGTAGAGACCTAACCAACAATCAAATGAAAAACCATTTCTTCTCTCTTCAAGATCCATTTCAACCCTCTAATTGTAATTCCACTCAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCTAAATCTCAACCATCTCCTTCTCCTCCGCCGCCTCCTCCTGCACCGCCTGCTCCGTCGCTTCTTTCTTCTCCTCCGGCTCCTAAAATTTTGACTCATCAGAAACAGAGCACCCATCTCCCTAAACAACTCCATTCAACCTCTGCTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGCTGAAGAAGGTTTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTATAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCGCCTACTCACCGCAACTCTCTCGCCGGCTCCACCCGTCAGAAACCCATCACACCGTCCACCACCGCGTCCGGATCTGAAAAACTCGACCCGAAACAACCGGTCTGCTCGTCGGAAGAACAAAGTACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGAATCTCCGATTTGATCGTGAACGACGATTTCTATGTGGGTTTTGAAGAACTTGACAGCCCAATAACCGACGACTGCTTTTCCGATCCATTCCCGGCCAACTTCGACCTTCCATGGTTGTTTAACGGAAATCCAGACGGCGAAATTGTAAAACTCCCTTGTTAA | 1011 | 48.47 | MEVDWDLHAVVRGYSAAPSAATIVPASSSSSSSSSSSNNPVVPFSFGRDLTNNQMKNHFFSLQDPFQPSNCNSTQELHELFKPFFPKSQPSPSPPPPPPAPPAPSLLSSPPAPKILTHQKQSTHLPKQLHSTSASAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPSTTASGSEKLDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGISDLIVNDDFYVGFEELDSPITDDCFSDPFPANFDLPWLFNGNPDGEIVKLPC* | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7225695 | 7227936 | - | CsaV3_3G008610.1 | Csa03g00861 | 521766 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00861 | 336 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 1 | 319 | IPR044810 | GO:0003700 | |
Csa03g00861 | 336 | Pfam | WRKY DNA -binding domain | 160 | 217 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00861 | 336 | SUPERFAMILY | WRKY DNA-binding domain | 156 | 219 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00861 | 336 | MobiDBLite | consensus disorder prediction | 216 | 245 | - | - | |
Csa03g00861 | 336 | SMART | WRKY_cls | 158 | 218 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00861 | 336 | Gene3D | WRKY domain | 142 | 212 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00861 | 336 | MobiDBLite | consensus disorder prediction | 213 | 268 | - | - | |
Csa03g00861 | 336 | ProSiteProfiles | WRKY domain profile. | 153 | 219 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00861 | 336 | MobiDBLite | consensus disorder prediction | 112 | 135 | - | - | |
Csa03g00861 | 336 | MobiDBLite | consensus disorder prediction | 87 | 109 | - | - | |
Csa03g00861 | 336 | MobiDBLite | consensus disorder prediction | 84 | 151 | - | - | |
Csa03g00861 | 336 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 1 | 319 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00861 | Csa-Chr3:7225695 | Csa03g04408 | Csa-Chr3:38433423 | 3.17E-29 | dispersed | |
Csa01g02661 | Csa-Chr1:23633542 | Csa03g00861 | Csa-Chr3:7225695 | 4.07E-46 | transposed | |
Csa04g00126 | Csa-Chr4:722761 | Csa03g00861 | Csa-Chr3:7225695 | 2.22E-31 | transposed | |
Csa06g03875 | Csa-Chr6:30645979 | Csa03g00861 | Csa-Chr3:7225695 | 9.30E-45 | transposed | |
Csa03g00861 | Csa-Chr3:7225695 | Csa04g00611 | Csa-Chr4:4040395 | 6.60E-46 | wgd | |
Csa03g00861 | Csa-Chr3:7225695 | Csa05g00101 | Csa-Chr5:504127 | 6.73E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31146 | PF03106 | WRKY | 4.50E-25 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00861 | K13425 | - | csv:101217082 | 556.214 |