Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00861 ATGGAAGTCGATTGGGATCTTCATGCCGTCGTCAGAGGTTACTCCGCCGCGCCCTCTGCTGCTACCATTGTTCCCGCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACCCTGTCGTCCCTTTTTCTTTTGGTAGAGACCTAACCAACAATCAAATGAAAAACCATTTCTTCTCTCTTCAAGATCCATTTCAACCCTCTAATTGTAATTCCACTCAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCTAAATCTCAACCATCTCCTTCTCCTCCGCCGCCTCCTCCTGCACCGCCTGCTCCGTCGCTTCTTTCTTCTCCTCCGGCTCCTAAAATTTTGACTCATCAGAAACAGAGCACCCATCTCCCTAAACAACTCCATTCAACCTCTGCTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGCTGAAGAAGGTTTGTCAAGTTCCGGCGGAGTCTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTATAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACTTACACGGCGGAGCACAACCACCCGGCGCCTACTCACCGCAACTCTCTCGCCGGCTCCACCCGTCAGAAACCCATCACACCGTCCACCACCGCGTCCGGATCTGAAAAACTCGACCCGAAACAACCGGTCTGCTCGTCGGAAGAACAAAGTACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGAATCTCCGATTTGATCGTGAACGACGATTTCTATGTGGGTTTTGAAGAACTTGACAGCCCAATAACCGACGACTGCTTTTCCGATCCATTCCCGGCCAACTTCGACCTTCCATGGTTGTTTAACGGAAATCCAGACGGCGAAATTGTAAAACTCCCTTGTTAA 1011 48.47 MEVDWDLHAVVRGYSAAPSAATIVPASSSSSSSSSSSNNPVVPFSFGRDLTNNQMKNHFFSLQDPFQPSNCNSTQELHELFKPFFPKSQPSPSPPPPPPAPPAPSLLSSPPAPKILTHQKQSTHLPKQLHSTSASAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPSTTASGSEKLDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGISDLIVNDDFYVGFEELDSPITDDCFSDPFPANFDLPWLFNGNPDGEIVKLPC* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7225695 7227936 - CsaV3_3G008610.1 Csa03g00861 521766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00861 336 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 319 IPR044810 GO:0003700
Csa03g00861 336 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00861 336 SUPERFAMILY WRKY DNA-binding domain 156 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00861 336 MobiDBLite consensus disorder prediction 216 245 - -
Csa03g00861 336 SMART WRKY_cls 158 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00861 336 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00861 336 MobiDBLite consensus disorder prediction 213 268 - -
Csa03g00861 336 ProSiteProfiles WRKY domain profile. 153 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00861 336 MobiDBLite consensus disorder prediction 112 135 - -
Csa03g00861 336 MobiDBLite consensus disorder prediction 87 109 - -
Csa03g00861 336 MobiDBLite consensus disorder prediction 84 151 - -
Csa03g00861 336 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00861 Csa-Chr3:7225695 Csa03g04408 Csa-Chr3:38433423 3.17E-29 dispersed
Csa01g02661 Csa-Chr1:23633542 Csa03g00861 Csa-Chr3:7225695 4.07E-46 transposed
Csa04g00126 Csa-Chr4:722761 Csa03g00861 Csa-Chr3:7225695 2.22E-31 transposed
Csa06g03875 Csa-Chr6:30645979 Csa03g00861 Csa-Chr3:7225695 9.30E-45 transposed
Csa03g00861 Csa-Chr3:7225695 Csa04g00611 Csa-Chr4:4040395 6.60E-46 wgd
Csa03g00861 Csa-Chr3:7225695 Csa05g00101 Csa-Chr5:504127 6.73E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31146 PF03106 WRKY 4.50E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00861 K13425 - csv:101217082 556.214