Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00872 ATGTCAGTTTATGATGCTGCATTTGTGAACACGGAGCTCTCTAAACCCACTTCGATTTTCGGCCTTCGTCTTTGGGTTGTTATCGGAATATTTGTTGGAGCTCTAATAGTTCTTGCACTGTTTCTTCTTTCGCTTTGCCTCACTTCTCGCAAGCGGAACCGCCATAAGAATCAAATCGGTTTCCCTAAGTCCACTACTCCCCATTCTCCTCCTGCCGTTTCGAAAGAGATCCAGGAGATTGTACACCATGCCGTGCCGGATCATCACCACCATGTTCAGCCGGAAATTCATGTCGAGATCGGGAAATTGGAGCATCGAGTTGTTTTTTCTGATAGACCTTCTAGTGGTGAGAGTAGAGGTACTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCACACCTCGGTTGGGGAAGATGGTATACTCTGAGAGAGCTTGAGGCGGCTACTAATGGCTTGTGTGAAGAGAATGTGATTGGAGAAGGTGGATATGGGATCGTGTATTTAGGCATTTTAGGAGATGGTACCAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAAAGGGAATTCAAAGTGGAAGTGGAAGCAATTGGGCGGGTAAGACACAAGAATCTTGTCAGGTTACTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATTTAGACCAATGGCTTCATGGCGATGTTGGGGATGTGAGCCCTTTGACGTGGGAGATTCGTGTTAACATCATACTTGGAACAGCAAAGGGATTAGCTTATCTTCATGAGGGTCTTGAACCAAAGGTTGTGCACCGTGATGTAAAATCAAGCAATATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTCTGTTCTGAAAGAAGTTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCACCTGAGTACGCCTGCACTGGAATGTTGAATGAAAAGAGTGATGTTTATAGCTTTGGAATTCTGATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTACAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCTATGGTTGGAGACAGAAAATCTGAGGAGGTGGTTGATCCGAAGTTACGTGAGAAGCCACCTTCCAAAGGTCTCAAACGCGTTTTGCTGGTTGCTCTTCGTTGTGTCGACCCGGATGCCACAAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGTTATCTCATGATGAACACCGGGTTGGCAAGGATTCTACTCATTCAATTGAAGGCCATCAACATGAGAACCGAGCCGTTTCAAGACGAGTTAACAATCAGAAAGATGAAGGAGCATCTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCACCATCAAAGTAGGTGGAGATAA 1479 44.56 MSVYDAAFVNTELSKPTSIFGLRLWVVIGIFVGALIVLALFLLSLCLTSRKRNRHKNQIGFPKSTTPHSPPAVSKEIQEIVHHAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGTVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLREKPPSKGLKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHDEHRVGKDSTHSIEGHQHENRAVSRRVNNQKDEGASSNISEGDSDGNIHHQSRWR* 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7303454 7305695 + CsaV3_3G008720.1 Csa03g00872 521777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00872 492 Coils Coil 450 470 - -
Csa03g00872 492 MobiDBLite consensus disorder prediction 437 465 - -
Csa03g00872 492 ProSiteProfiles Protein kinase domain profile. 158 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00872 492 PANTHER OS01G0323000 PROTEIN 2 446 - -
Csa03g00872 492 CDD STKc_IRAK 164 430 - -
Csa03g00872 492 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 446 - -
Csa03g00872 492 MobiDBLite consensus disorder prediction 466 482 - -
Csa03g00872 492 SUPERFAMILY Protein kinase-like (PK-like) 137 430 IPR011009 -
Csa03g00872 492 MobiDBLite consensus disorder prediction 114 130 - -
Csa03g00872 492 Gene3D Transferase(Phosphotransferase) domain 1 234 446 - -
Csa03g00872 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Csa03g00872 492 Gene3D Phosphorylase Kinase; domain 1 140 233 - -
Csa03g00872 492 Pfam Protein tyrosine and serine/threonine kinase 161 429 IPR001245 GO:0004672|GO:0006468
Csa03g00872 492 MobiDBLite consensus disorder prediction 111 130 - -
Csa03g00872 492 MobiDBLite consensus disorder prediction 437 492 - -
Csa03g00872 492 SMART serkin_6 158 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00872 492 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00872 Csa-Chr3:7303454 Csa06g02950 Csa-Chr6:25534935 0 dispersed
Csa03g01746 Csa-Chr3:13084011 Csa03g00872 Csa-Chr3:7303454 1.78E-61 dispersed
Csa03g00872 Csa-Chr3:7303454 Csa02g01935 Csa-Chr2:18160240 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77967 PF07714 PK_Tyr_Ser-Thr 1.00E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00872 - - csv:101219288 954.896