Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00877 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACAAAGATTTCCGAATACTTTGACCGAGTTCTTAGACCGAATGTTGTTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTCAAAAGAGCCACTGTACGTGGTTTACATATCCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCTGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTGTTTTGGGAACTTGTCAAATTATCGGAATTATTCGTCAGCTTCTGGTAGAAAAGCTGATATAAGTGGAGATACTGGTGTGCCAGCAGCTTCTTCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATGTTGGAAGGGACTTGCTTGAAAAGGTTAAGGATGTCTGGCAAAGTGCTGTTGATGCAGCATCTTTTACGGGGCAGAAGGCTAAAGAAGTTTCGGATGAATTATCTCCGCATGTAGATAAACTACTCGATTCACATCCGTATCTAAAAAATGTGATTGTTCCTGTGAGTATGACCTTGGGTGCTACTCTTTTGGCTTGGCTGGTAATGCCTAGGCTTTTGAAGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATAATATCTGGATCCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTCGAGGATCCTTTGCGATATCTTGTTACCTTTTTTGCATTTTCTCAAATTGGCGTGATAGTTGCACCAACTGCAGTAGCACCGGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCAAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCCTTGACAAAGTTTCATCTGTTGCCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCTATGTTGACGGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGGAACATTTTGAGTGGCTTAACGATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCAAGGGCCCAGTGGCGTGCAATCGTGAAGAGGGTTCCTTTGCAAGTTGATGATATTAGTACAGTTTCTCAGATAACAGATGATATTAAGAATATGCTTACGTCTCACCCCAAGGTGTTCTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTAGGTTGTAACCTTAGAAAAATGGGTAAAGATGAATCGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCGAAAGGTGCAACCTTAGGAAGCACCATGTCAGATTGGACGAACAAGTAA 1566 42.02 MACRRFAACSFQSFKPYTKISEYFDRVLRPNVVLNKRYYKDESHSFKRATVRGLHIPSYGTHRIDTFLPASSMKYWNTIPLTCFGNLSNYRNYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVAIISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKNMLTSHPKVFLGKEAPYCFLSQIESTYAELTLGCNLRKMGKDESFSTEQDILLQSVQIIKAKGATLGSTMSDWTNK* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7320397 7323142 - CsaV3_3G008770.1 Csa03g00877 521782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00877 521 Pfam Mechanosensitive ion channel 308 508 IPR006685 GO:0016020|GO:0055085
Csa03g00877 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 69 517 - -
Csa03g00877 521 Gene3D - 366 414 IPR023408 -
Csa03g00877 521 MobiDBLite consensus disorder prediction 98 124 - -
Csa03g00877 521 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 69 517 - -
Csa03g00877 521 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
Csa03g00877 521 Gene3D - 262 364 - -
Csa03g00877 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00687 Csa-Chr3:6108124 Csa03g00877 Csa-Chr3:7320397 2.07E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00877 K22047 - csv:101220483 1025.77