Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00877 ATGGCATGCAGAAGGTTTGCTGCGTGCTCATTTCAATCTTTCAAGCCTTACACAAAGATTTCCGAATACTTTGACCGAGTTCTTAGACCGAATGTTGTTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTCAAAAGAGCCACTGTACGTGGTTTACATATCCCAAGTTATGGTACACATCGCATTGATACATTTCTGCCTGCATCGTCAATGAAATACTGGAACACTATCCCTCTTACTTGTTTTGGGAACTTGTCAAATTATCGGAATTATTCGTCAGCTTCTGGTAGAAAAGCTGATATAAGTGGAGATACTGGTGTGCCAGCAGCTTCTTCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATGTTGGAAGGGACTTGCTTGAAAAGGTTAAGGATGTCTGGCAAAGTGCTGTTGATGCAGCATCTTTTACGGGGCAGAAGGCTAAAGAAGTTTCGGATGAATTATCTCCGCATGTAGATAAACTACTCGATTCACATCCGTATCTAAAAAATGTGATTGTTCCTGTGAGTATGACCTTGGGTGCTACTCTTTTGGCTTGGCTGGTAATGCCTAGGCTTTTGAAGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATAATATCTGGATCCTTACCTAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTCGAGGATCCTTTGCGATATCTTGTTACCTTTTTTGCATTTTCTCAAATTGGCGTGATAGTTGCACCAACTGCAGTAGCACCGGAGTTTGTTTCACAGGCATGCAGGGGGGCTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCAAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCCTTGACAAAGTTTCATCTGTTGCCCTATTTGCTATTGGATTGATGGCTTTGGCCGAGGCATCTGGTGTGGCTGTTCAATCTATGTTGACGGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGATATACTTGGGAACATTTTGAGTGGCTTAACGATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCGCTATTAAGTGCTGAAAAATTTCCAGTCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTAATTATAAATAAGTCAAGGGCCCAGTGGCGTGCAATCGTGAAGAGGGTTCCTTTGCAAGTTGATGATATTAGTACAGTTTCTCAGATAACAGATGATATTAAGAATATGCTTACGTCTCACCCCAAGGTGTTCTTGGGCAAGGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTAGGTTGTAACCTTAGAAAAATGGGTAAAGATGAATCGTTCTCTACAGAGCAAGATATTCTCCTTCAGTCAGTACAAATCATTAAGGCGAAAGGTGCAACCTTAGGAAGCACCATGTCAGATTGGACGAACAAGTAA 1566 42.02 MACRRFAACSFQSFKPYTKISEYFDRVLRPNVVLNKRYYKDESHSFKRATVRGLHIPSYGTHRIDTFLPASSMKYWNTIPLTCFGNLSNYRNYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQKAKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVAIISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVILSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPVVVPNSLFSSQVIINKSRAQWRAIVKRVPLQVDDISTVSQITDDIKNMLTSHPKVFLGKEAPYCFLSQIESTYAELTLGCNLRKMGKDESFSTEQDILLQSVQIIKAKGATLGSTMSDWTNK* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7320397 7323142 - CsaV3_3G008770.1 Csa03g00877 521782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00877 521 Pfam Mechanosensitive ion channel 308 508 IPR006685 GO:0016020|GO:0055085
Csa03g00877 521 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 69 517 - -
Csa03g00877 521 Gene3D - 366 414 IPR023408 -
Csa03g00877 521 MobiDBLite consensus disorder prediction 98 124 - -
Csa03g00877 521 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 69 517 - -
Csa03g00877 521 SUPERFAMILY Sm-like ribonucleoproteins 350 415 IPR010920 -
Csa03g00877 521 Gene3D - 262 364 - -
Csa03g00877 521 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 349 IPR011014 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00877 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101220483 1025.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00687 Csa-Chr3:6108124 Csa03g00877 Csa-Chr3:7320397 2.07E-14 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00877 Csa_Chr03 FPKM 0.617605 0.0 0.462068 0.90956 11.100375 8.855784 10.672963 0.533731 0.843711 1.125766