Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00879 ATGGCATCAAATTTGGGAGGAGCATCGATATCACAAACAGATGATTTCGAGACGTTCACACCAACGACTGATGTTGAGCCTCTAAAGAGGGCTTGGCGTAATGAAAAGGCTGCTCCTGAGATTCTACCCTATGAGGCATCTTTGGTTGGGAGAATCAAAGAGCAGATCCAAGCAATGGAAGATACTATAGAGGAATATTCAAGAAGTGGCATCGATCCCCTCATTGTATCACTCTATCAAATGGATTTAGATAGGGTACAGTTCTTGTTGAGATCATATATTAGGAGTCGCTTGCAGAAGATTGAGAAGTACATGCTCTATATCTTGAAGTCAGATGAACTTTTCGGACGTCTTTCTAGAGAAGAGATAACATTTACTGATAGGTGTCGCCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCAAATAATTATCAGGACATTTTGAAGCAATCTATAACAAGTGAAGAGGATGACATGGTTCCAGAACCTCCATTGGACACGTTTGTGGTCTGCAAAAGTAAGGAATATCTTGAACACATACAGCTTGAGGATGAGGAAGAGAGAGCATCTAGTAGAATAGAGGAGCCTTTTGAGATGGAGGCCAATGTGTTGCACATTATTCGCTACAGGCCCATAAAATCACTTGTAGAGAGCGGGAGAATTGATTTGCTGTAA 690 40.43 MASNLGGASISQTDDFETFTPTTDVEPLKRAWRNEKAAPEILPYEASLVGRIKEQIQAMEDTIEEYSRSGIDPLIVSLYQMDLDRVQFLLRSYIRSRLQKIEKYMLYILKSDELFGRLSREEITFTDRCRHDMKKHFDESVLSKLPNNYQDILKQSITSEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEEERASSRIEEPFEMEANVLHIIRYRPIKSLVESGRIDLL* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7328060 7332303 - CsaV3_3G008790.1 Csa03g00879 521784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00879 229 Coils Coil 49 69 - -
Csa03g00879 229 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g00879 229 Pfam DNA replication complex GINS protein SLD5 C-terminus 168 229 IPR031633 -
Csa03g00879 229 MobiDBLite consensus disorder prediction 1 21 - -
Csa03g00879 229 SUPERFAMILY GINS helical bundle-like 20 153 IPR036224 -
Csa03g00879 229 Pfam GINS complex protein 73 122 IPR021151 -
Csa03g00879 229 Gene3D - 11 219 - -
Csa03g00879 229 SUPERFAMILY PriA/YqbF domain 170 229 - -
Csa03g00879 229 PIRSF GINS_Sld5 1 229 IPR008591 GO:0006261
Csa03g00879 229 PANTHER SLD5 PROTEIN 10 229 IPR008591 GO:0006261
Csa03g00879 229 CDD GINS_A_Sld5 24 142 IPR038749 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00879 K10735 - csv:101210888 447.973