Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00887 ATGGCGGTCGTGAGTGCTATGCAAGCAACTACTCCTCGAGTTGGTCCAATTAATTATGCCGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAAATTGTAGAAGAGCCTGTGGGAGCTATTAGTGAAGATATAATTTATGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCACGTGGGAAGAAGATTTGCCTCCTTCACGTTCATGTACCTGCACAGATGATTCCATTAATGGGAACCAAGTTTCCCGCGAATTCATTGGAGAAAGAGGAGGTGAAGGCATATCACGAATTTGAGAAGCAAAATTTGCCGAGGGTCATGAACGAGTATATTCTTTACTGTCTTCAAGAAGGGGTTCATGCTGATAAACTATATGGTGAAGCTGAGTATATTGAAAAGGGAATAGTTGATATGATTTCCATGCACAGGATCGATAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCAAGGAAAATGGTGGATTTGAAGTCTAAGAAAGCCATCTACGTGCGTTCACAGGCACCGGCTTTCTGCCACATTGAGTTTATTTGCAAGGGTAACCGCATCTGCACCAGGGAGGGTATGTCAGATGAAGCTCAAGTGGAAACCATCATCTCATCTCCACAAATAAGTCCAGACGCTGAATCCTCAGAAGTTACCCACCGGAGATCTCAGTCATTGCCACTAGGACAGGTTAATAGCAGGGAAGTGGGAAGCCCGTCTTCCAGTTTACGTCCTAAAAGGAGATCATTGCTTCTTGACCATTTTCGAGGGAACATACTCGATCCTTCTTCTCCAGATATTAAGAATGGGGTTCATGCTGCAAAACACTTGGATGTTAACGAGGCTATGGATGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGAAAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCATCCCCATTTTTTAGGGTTGAATTATGTGCAAATGGGCTGGAGGATGGGAAAACCAGTGACAACCTTTACAATCAATGTGAGCGGGTGATGATGGAAGCTGCAAATGCAAGGCGTGAAGCATTTCTAGAGGCAATTGCACGTAGGAAATCCGAGAAAGAAACTGTTAACGCTCTACACAGGGTCAGAGCTGCAGAAGGGTTGTATGCCGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGGGAAACTTGAAAGTATAAAGACACAATTGAATGAAGAGATGGAAAAGCTCCGGATAGCTCAAGATGAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCCGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAGTTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAAATTCATCGCGATAGTGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCGAGACCTTACACAGTTCTTCACCGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTCGCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGCTAACTTGCGTCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCGGAAGCTTGGGTTCTCATCTATGAATACCTCTGTAATGGAAGCCTCGAAGATAGGCTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGCATTGCCACTGAGTTATGCTCAGCCCTTATGTTTCTTCACTCGAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGCGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAATGCTAAACAGCGAAACCCTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATCCTTTTGCGGTTATTGACCGGTAGGTCTGCAGTGGGAATAGCAAAGGAAGTGCAATATGCGATGGGAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCCGAACAGCTTGCTCGATTGGCATTGAGGTGTTGTGATATGAATCGAAAGAGCCGCCCTGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGGGCTTCCTGTGGGGGCCGATTGTCCATCCAGCTTGGTTCTGCAGAACACTCTCAACCTCCCTCTTATTTTATCTGCCCCATCTTTCAGGAAATTATGCAAGATCCACATGTAGCTGCAGATGGTTATACATACGAAGCAGAGGCTATACGAGGATGGCTAGACAGTGGACACGAAACTTCGCCAATGACGAATCTTAGGCTTGAGAACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCCATCCAGGAGTGGCTCCATCATAACTGA 2628 44.48 MAVVSAMQATTPRVGPINYAEASPIMISSSREIVEEPVGAISEDIIYVAVGKDVKECLSVLRYALKSSRGKKICLLHVHVPAQMIPLMGTKFPANSLEKEEVKAYHEFEKQNLPRVMNEYILYCLQEGVHADKLYGEAEYIEKGIVDMISMHRIDKLVMGAAVDKCYSRKMVDLKSKKAIYVRSQAPAFCHIEFICKGNRICTREGMSDEAQVETIISSPQISPDAESSEVTHRRSQSLPLGQVNSREVGSPSSSLRPKRRSLLLDHFRGNILDPSSPDIKNGVHAAKHLDVNEAMDEWGLLTRRSPSERSENSIRSPRGVIDMAPSPFFRVELCANGLEDGKTSDNLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKGKLESIKTQLNEEMEKLRIAQDEKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIHRDSALREAEELRKNQSTGRDLTQFFTEFPFREIEEATKNFDPSLKIGEGGYGSIFRANLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDEMLNSETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAVGIAKEVQYAMGNGKLESILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGRLSIQLGSAEHSQPPSYFICPIFQEIMQDPHVAADGYTYEAEAIRGWLDSGHETSPMTNLRLENRNLVPNRALRSAIQEWLHHN* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7385538 7391727 - CsaV3_3G008870.1 Csa03g00887 521792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00887 875 SUPERFAMILY Protein kinase-like (PK-like) 495 774 IPR011009 -
Csa03g00887 875 SMART Ubox_2 808 871 IPR003613 GO:0004842|GO:0016567
Csa03g00887 875 Pfam Protein kinase domain 522 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00887 875 ProSiteProfiles U-box domain profile. 804 875 IPR003613 GO:0004842|GO:0016567
Csa03g00887 875 CDD RING-Ubox_WDSUB1_like 809 850 - -
Csa03g00887 875 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 871 - -
Csa03g00887 875 Coils Coil 345 365 - -
Csa03g00887 875 Pfam U-box domain 806 874 IPR003613 GO:0004842|GO:0016567
Csa03g00887 875 Gene3D Transferase(Phosphotransferase) domain 1 590 790 - -
Csa03g00887 875 ProSiteProfiles Protein kinase domain profile. 517 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00887 875 MobiDBLite consensus disorder prediction 219 258 - -
Csa03g00887 875 CDD STK_N 45 198 - -
Csa03g00887 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 803 875 IPR013083 -
Csa03g00887 875 PANTHER OS02G0152300 PROTEIN 41 871 - -
Csa03g00887 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Csa03g00887 875 SMART serkin_6 517 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00887 875 Coils Coil 387 491 - -
Csa03g00887 875 Gene3D Phosphorylase Kinase; domain 1 496 589 - -
Csa03g00887 875 ProSitePatterns Protein kinases ATP-binding region signature. 523 544 IPR017441 GO:0005524
Csa03g00887 875 SUPERFAMILY RING/U-box 800 873 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00887 Csa06g00058 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00887 Csa-Chr3:7385538 Csa07g02376 Csa-Chr7:21915512 1.52E-96 dispersed
Csa03g01725 Csa-Chr3:12921325 Csa03g00887 Csa-Chr3:7385538 0 transposed
Csa06g01490 Csa-Chr6:12600999 Csa03g00887 Csa-Chr3:7385538 5.47E-164 transposed
Csa06g03109 Csa-Chr6:26600834 Csa03g00887 Csa-Chr3:7385538 1.07E-88 transposed
Csa03g00887 Csa-Chr3:7385538 Csa06g00058 Csa-Chr6:375570 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77969 PF00069 Pkinase 9.50E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00887 - - csv:101211387 1730.69