Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00909 ATGGATTTATCTTGTAGTACTTGGAAGCAAAATGTGTTACGTGGTAGTGAAAGAACATATTGCAAGACGTTGGAACAGTTTGGTCCCAGCCGTGTGCTTAGAAATAGAATTTTTGATGCTAAGTTGACTGGTGGTTCAAGAGTGAGTTATAAAGTGCCTAAGAAGAGAAACAGAATTGTAGCTTCTAGTGATTCCAATCATCTGAGTCTGGTTTGTGCCACCAAGTTCGACAGGGCTTTGCAACTTTTTACGCACAAGAGATTCTTGAACTGGAACAATAAGATAAGTGGACGGGGGATGGGTATGGTTCATTTAGAGTGCCAAAACAATGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATTGAATATGTAAATTCTGGTGATGAGGGGTCCAGTTCTGGGCCTACTGATGGTGTAGGGTCAGCTGGTTCCAGAGAAGTGGGTGGAGAAGCAGAAACAGTTGAAACAAACATACCGACTGTTGATGAGCTCAGAGAATTGCTGCAAAAGGCCATGAAAGAACTGGAAGTTGCGAGACTTAACAGCACAATGTTTGAGGAGAGAGCCCAAAAAATTTCAGAAGCAGCAATAGCTTTGCAAGATGAAGCAACCATTGCTTGGAATGATGTGAACTCTACTCTTGATTCTGTACAACTGATAGTGAACGAAGAATATGCTGCCAAAGAAGCGGTTCAAAAGGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATCGAGTCACTGGAGCTGGCAAGAAGAGGAAGCGATTTTCCGGAAACATCAATGGATATTGATGGCAACGAAGATCAAGAATCATTGTTAGTTGCTCAAGAGGACATCACAGAATGCCGAGCAAATTTAGAAATCTGTAATGCAGAATTGAAGCGCTTACAGAGTAAGAAGGAAGAGTTACAGAAGGAAGTGGACAAGTTGAACGAGTTAGCTGAAAAAGCACAATTGAATGCATTGAAAGCTGAAGAAGATGTGGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTCGAGGCTGCCCAAAGGGTCAATGATGCTGAAAGAGCATTACAGAAAATGGAGAAATCTTTATCAAGTTCTTTTGTTGACACTCCAGACACCACTCAGGGGTCAAATGTAATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAATTTTCTGGTGATATTTCAGTTGAAATGGATAGAGAGTTGCCACTTAATGGTGATTCCTTATCAATCAAGTCTCTGCCAGGTAGCCTTTCAGATTCTGAAGGCTCTGATCAACCATATTACTTAAGCGATAGCGAGATTGGAAAATTAAGTTCAGACTCTGCAAAGGAGGTTGAATCTGGAGCAGAGAAGTCTATTGTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACAAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCCTCTCGCTTTTTTTCAGCATCATTCTTTTCGTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTTTTCCAGGGTCTCCTGGATTCCACCAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTACTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGACCAGACAGGAGTTCTCAGATGATTCTGCAGCCTGATGTTGTCACTATTAGCACCGATGATGTTTCCTTGGACACAAAGCCCTTATTTCAACAATTGAGGAAACTTCCTAAAAGAGTGAAGAAGTTAATTTCACAGATTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCCAGTGTCATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGCCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCATGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGGCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCCTGGTAGCTCACATGGTCTGTGGCCAGGCTGGCCCAGCTGCTATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGTACTTCACGACATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTTTTGCTGATTCTCATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATCGCCGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATTGTTGCCATTTCTGCCATAATAGCTGGTGGGCGTCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACTAGTCTACTTACTGCCAGGGCCGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACAGAGTTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTGTTGGGTCTCTTCTTCATGACGGTCGGGATGTCTATCGATCCAAAACTTCTTTTTTCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCGCTGGTTGGTAGACTTTTTGGTATCTCAATCATATCTGCGATAAGAGTTGGGTTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCATTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCCCTTACACCCTGGCTGGCTGCTGGCGGTCAGTTAATTGCTTCCCGGTTTGAGCAGCATGATGTCCGGAGTTTATTGCCTGTTGAAAGTGAGACAGATGATTTACAAGATCATATTATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCGGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTTTACACAAAGTCGGTGCTGAAAGGGCGTGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCCTTGAGCAAATATTTCCCTAACGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGTCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGTTTACAGTTGGCTGCCGCTGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCCGAACTTACCGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGTAAACCAAAAATCCAAACCTCTGATTCTTCAGATGAGAATCAAGTCACTGAAGGAACACTGGCCATATGA 3639 43.42 MDLSCSTWKQNVLRGSERTYCKTLEQFGPSRVLRNRIFDAKLTGGSRVSYKVPKKRNRIVASSDSNHLSLVCATKFDRALQLFTHKRFLNWNNKISGRGMGMVHLECQNNDSLAFIDGNGRNIEYVNSGDEGSSSGPTDGVGSAGSREVGGEAETVETNIPTVDELRELLQKAMKELEVARLNSTMFEERAQKISEAAIALQDEATIAWNDVNSTLDSVQLIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELARRGSDFPETSMDIDGNEDQESLLVAQEDITECRANLEICNAELKRLQSKKEELQKEVDKLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVNDAERALQKMEKSLSSSFVDTPDTTQGSNVIEEVENEDNKAVLEFSGDISVEMDRELPLNGDSLSIKSLPGSLSDSEGSDQPYYLSDSEIGKLSSDSAKEVESGAEKSIVSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDSTKKQLPKLIVGAVLLGAGIAIFANRPDRSSQMILQPDVVTISTDDVSLDTKPLFQQLRKLPKRVKKLISQIPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHMVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLFSNFPVIMGSLGLLIGGKTILVALVGRLFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKIQTSDSSDENQVTEGTLAI* 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7523616 7535490 + CsaV3_3G009090.1 Csa03g00909 521814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00909 1212 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1212 - -
Csa03g00909 1212 MobiDBLite consensus disorder prediction 451 487 - -
Csa03g00909 1212 MobiDBLite consensus disorder prediction 126 141 - -
Csa03g00909 1212 Pfam Sodium/hydrogen exchanger family 614 984 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa03g00909 1212 Coils Coil 163 183 - -
Csa03g00909 1212 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1013 1155 IPR036291 -
Csa03g00909 1212 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1212 - -
Csa03g00909 1212 ProSiteProfiles RCK N-terminal domain profile. 1016 1138 IPR003148 GO:0006813
Csa03g00909 1212 Coils Coil 286 334 - -
Csa03g00909 1212 MobiDBLite consensus disorder prediction 126 154 - -
Csa03g00909 1212 Gene3D - 604 992 IPR038770 -
Csa03g00909 1212 Coils Coil 349 369 - -
Csa03g00909 1212 Gene3D - 1012 1176 - -
Csa03g00909 1212 Pfam TrkA-N domain 1017 1130 IPR003148 GO:0006813
Csa03g00909 1212 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 615 895 IPR004771 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00909 Csa-Chr3:7523616 Csa07g00629 Csa-Chr7:4555610 2.85E-100 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00909 - - csv:101213081 2222.97