Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00940 | ATGGTGAGAGGAAAAACTCAGATGAGAAGAATAGAAAATGCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGGCTTCTTAAGAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAACTTGCTCTCATTATTTTCTCTTCCAGAGGCAAACTTTATGAATTTTCAAGCTCAAGTATGCAGGCCACGGTGGGGAGATATCTAAGGCATACAAGATCAGATCAATCCCATCATCTTGATCAACCTTTACCTCATCAACACGATTTACAAGCTGTTCAGAATGAAGCTGCAAGTTTGTTGAAGGAGATAGAGTCAGTTGAAGTTTCAAAGAGGAAATTGCTGGGTGAAAGTCTAGGAACAAGCTCATATGAAGAACTCCAACAATTAGAACAACAACTAGAAAGAAGCTTATCCCATATTAGAGCTAGAAAGCATGAGGTTTACAGGGAACAGATAGAACAACTAAAAGAAAAGGAGAAGCATTTGACAGCTGAAAATGCAAAGCTAGCTAAGAAGTACGACGTTGAAGAGGAGCGTCAACAATCTCCAACTCAAATACAGTTAGCAGAAGTTTCACCTAACTATGGAGAAAGTAGTTCCATTTCAGACGTTGAAACGGATTTGTTCATTGGACCTCCCAAGTCCAGATCCAAGTGA | 663 | 40.72 | MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSDQSHHLDQPLPHQHDLQAVQNEAASLLKEIESVEVSKRKLLGESLGTSSYEELQQLEQQLERSLSHIRARKHEVYREQIEQLKEKEKHLTAENAKLAKKYDVEEERQQSPTQIQLAEVSPNYGESSSISDVETDLFIGPPKSRSK* | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7691745 | 7696776 | + | CsaV3_3G009400.1 | Csa03g00940 | 521845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00940 | 220 | CDD | MADS_MEF2_like | 3 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Csa03g00940 | 220 | Coils | Coil | 125 | 174 | - | - | |
Csa03g00940 | 220 | MobiDBLite | consensus disorder prediction | 175 | 220 | - | - | |
Csa03g00940 | 220 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | Coils | Coil | 91 | 111 | - | - | |
Csa03g00940 | 220 | MobiDBLite | consensus disorder prediction | 182 | 207 | - | - | |
Csa03g00940 | 220 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | ProSiteProfiles | K-box domain profile. | 91 | 183 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa03g00940 | 220 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 216 | - | - | |
Csa03g00940 | 220 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | Pfam | K-box region | 87 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Csa03g00940 | 220 | Gene3D | - | 14 | 90 | IPR036879 | GO:0003677|GO:0046983 | |
Csa03g00940 | 220 | PANTHER | MADS BOX PROTEIN | 1 | 216 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g00940 | Csa06g00602 | CCT | |
Csa03g00940 | Csa06g00602 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00940 | Csa-Chr3:7691745 | Csa06g00602 | Csa-Chr6:5105163 | 2.69E-75 | dispersed | |
Csa03g00940 | Csa-Chr3:7691745 | Csa05g00336 | Csa-Chr5:2144062 | 9.22E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31154 | PF01486 | K-box | 2.80E-26 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00940 | - | - | csv:101209501 | 407.912 |