Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00940 ATGGTGAGAGGAAAAACTCAGATGAGAAGAATAGAAAATGCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGGCTTCTTAAGAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCTGAACTTGCTCTCATTATTTTCTCTTCCAGAGGCAAACTTTATGAATTTTCAAGCTCAAGTATGCAGGCCACGGTGGGGAGATATCTAAGGCATACAAGATCAGATCAATCCCATCATCTTGATCAACCTTTACCTCATCAACACGATTTACAAGCTGTTCAGAATGAAGCTGCAAGTTTGTTGAAGGAGATAGAGTCAGTTGAAGTTTCAAAGAGGAAATTGCTGGGTGAAAGTCTAGGAACAAGCTCATATGAAGAACTCCAACAATTAGAACAACAACTAGAAAGAAGCTTATCCCATATTAGAGCTAGAAAGCATGAGGTTTACAGGGAACAGATAGAACAACTAAAAGAAAAGGAGAAGCATTTGACAGCTGAAAATGCAAAGCTAGCTAAGAAGTACGACGTTGAAGAGGAGCGTCAACAATCTCCAACTCAAATACAGTTAGCAGAAGTTTCACCTAACTATGGAGAAAGTAGTTCCATTTCAGACGTTGAAACGGATTTGTTCATTGGACCTCCCAAGTCCAGATCCAAGTGA 663 40.72 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSRGKLYEFSSSSMQATVGRYLRHTRSDQSHHLDQPLPHQHDLQAVQNEAASLLKEIESVEVSKRKLLGESLGTSSYEELQQLEQQLERSLSHIRARKHEVYREQIEQLKEKEKHLTAENAKLAKKYDVEEERQQSPTQIQLAEVSPNYGESSSISDVETDLFIGPPKSRSK* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7691745 7696776 + CsaV3_3G009400.1 Csa03g00940 521845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00940 220 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Csa03g00940 220 Coils Coil 125 174 - -
Csa03g00940 220 MobiDBLite consensus disorder prediction 175 220 - -
Csa03g00940 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 Coils Coil 91 111 - -
Csa03g00940 220 MobiDBLite consensus disorder prediction 182 207 - -
Csa03g00940 220 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Csa03g00940 220 ProSiteProfiles K-box domain profile. 91 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g00940 220 PANTHER MADS-BOX PROTEIN SOC1 1 216 - -
Csa03g00940 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa03g00940 220 Pfam K-box region 87 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa03g00940 220 Gene3D - 14 90 IPR036879 GO:0003677|GO:0046983
Csa03g00940 220 PANTHER MADS BOX PROTEIN 1 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00940 Csa06g00602 CCT
Csa03g00940 Csa06g00602 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00940 Csa-Chr3:7691745 Csa06g00602 Csa-Chr6:5105163 2.69E-75 dispersed
Csa03g00940 Csa-Chr3:7691745 Csa05g00336 Csa-Chr5:2144062 9.22E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31154 PF01486 K-box 2.80E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00940 - - csv:101209501 407.912