Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00960 ATGGATCGAGCCACCGCCGCGCATGGCCGTCCACTTCCGCCGCCGTTTATTTCAAGAGATTTCCATCTCAATCCTCACCATCATTTCCTCCACCAAAATCCCGACCAACATTACAACGAAAACGGTAGCTCCGGCAGCGGCGGAGGAGACGGCGAGGTTTTGAGAAGGCCACGCGGACGACCCGCTGGATCGAAGAACAAGCCGAAGCCGCCGACGATAATCACACGGGATAGTGCCAACGCACTCCGATGCCACGTCATCGAAATCGCCAACGCTAACGACGTGATTGAAACCCTCACCATTTTCGCACGTCAACGCCAGCGTGGCATTTGTGTCCTGACCGGCGCCGGAGCGGTCACCAACGTCACACTCAAGCAGCCGGTCTCCACCGCTGGAGCGGTGATATCTCTGCCGGGGAGATTCGAGATTCTTTCGTTGTCGGGATCGTTTCTGCCGCCGCCAGCACCAGCGGCGGCATCTGGGCTGACCGTGTATTTGTCCGGCGGGCAGGGGCAGGTTGTAGGAGGAAGCGTGGTGGGCCCACTTATGAGTTCGGGGCCGGTGGTGATTACGGCTGCATCATTTGGAAACGCAGCGTACGAGAGATTGCCGGTGGAGGATGATGACGTGGAAGCGGCGGATGCAGGAAGTAGTCCGATTAGGTCGCCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGATTTTCATGGACTGGCGCCGAATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTCCACCATTTTAG 792 57.7 MDRATAAHGRPLPPPFISRDFHLNPHHHFLHQNPDQHYNENGSSGSGGGDGEVLRRPRGRPAGSKNKPKPPTIITRDSANALRCHVIEIANANDVIETLTIFARQRQRGICVLTGAGAVTNVTLKQPVSTAGAVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLMSSGPVVITAASFGNAAYERLPVEDDDVEAADAGSSPIRSPENAVQQQQFLPDFHGLAPNLMNTCQLPTEPYWGTGRTPPF* 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7828396 7829686 - CsaV3_3G009600.1 Csa03g00960 521865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00960 263 Gene3D - 82 213 - -
Csa03g00960 263 MobiDBLite consensus disorder prediction 26 74 - -
Csa03g00960 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Csa03g00960 263 MobiDBLite consensus disorder prediction 1 20 - -
Csa03g00960 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 209 - -
Csa03g00960 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 35 263 - -
Csa03g00960 263 CDD DUF296 83 151 IPR005175 -
Csa03g00960 263 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Csa03g00960 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 263 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00960 Csa-Chr3:7828396 Csa03g01009 Csa-Chr3:8151266 2.13E-73 dispersed
Csa03g00960 Csa-Chr3:7828396 Csa05g00361 Csa-Chr5:2300479 1.07E-71 wgd
Csa03g00960 Csa-Chr3:7828396 Csa06g00611 Csa-Chr6:5164542 1.72E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00960 - - csv:101212439 493.041