Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00963 ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA 696 46.12 MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7849883 7851498 - CsaV3_3G009630.1 Csa03g00963 521868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00963 231 MobiDBLite consensus disorder prediction 1 16 - -
Csa03g00963 231 MobiDBLite consensus disorder prediction 1 22 - -
Csa03g00963 231 ProSiteProfiles LOB domain profile. 23 125 IPR004883 -
Csa03g00963 231 Pfam Lateral organ boundaries (LOB) domain 24 122 IPR004883 -
Csa03g00963 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 213 - -
Csa03g00963 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 213 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00963 Csa06g00614 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00963 Csa-Chr3:7849883 Csa06g00614 Csa-Chr6:5189706 1.38E-51 dispersed
Csa05g00729 Csa-Chr5:5004155 Csa03g00963 Csa-Chr3:7849883 3.27E-44 transposed
Csa03g00963 Csa-Chr3:7849883 Csa06g00613 Csa-Chr6:5177900 1.97E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31156 PF03195 LOB 1.70E-36 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00963 K21994 - csv:101216934 428.328