Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00963 | ATGAGCTCGAGGCGGAGTGGTGGAAGTTGCACAAAAGGCAAGGGTGGTGGCAGCAACGGTAGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTTGACTCCGAACAAGGTTCAACTCATTTTGCAGCTGTGCACAAGGTGTTTGGAGCAAGCAATGTGTCAAAGATGCTTCTACATATTCCTGAACATAAACGGCTTGATGCAGCTATAACTATATGTTACGAAGCACAAGCTCGAGTCAGAGAGCCAGTTTTGGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGCTGCAAGGTTGCAAATAGAGATCTCATATTTGCAAGCGTACCTAGCAACATCTGAGCTTCCAAGATCCGCACCCCATCTTCAGGCACAACCACCAGCTCTGGTCAAGAAGCCAACTCTATCCTCAATTATAAGCCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCTACTTCTCGATCCTGTCGAGCAAGTTTCACAGGAAAAATTGCAGTCTCCATTGGAATCATACCAAATTGGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAGTTGTCCAAAAACAACTGTCTTCGATGCAACGCATTGGTGCCTCTCTATTTCCAAACATCCCTAAACGAGCTTAA | 696 | 46.12 | MSSRRSGGSCTKGKGGGSNGSGGPCGACKFLRRKCMPECIFAPYFDSEQGSTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVSHIFALQQQAARLQIEISYLQAYLATSELPRSAPHLQAQPPALVKKPTLSSIISLPSDCPSFPAESDLSLLLDPVEQVSQEKLQSPLESYQIGSNNFPSMGSIDQQVVQKQLSSMQRIGASLFPNIPKRA* | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 7849883 | 7851498 | - | CsaV3_3G009630.1 | Csa03g00963 | 521868 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00963 | 231 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Csa03g00963 | 231 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Csa03g00963 | 231 | ProSiteProfiles | LOB domain profile. | 23 | 125 | IPR004883 | - | |
Csa03g00963 | 231 | Pfam | Lateral organ boundaries (LOB) domain | 24 | 122 | IPR004883 | - | |
Csa03g00963 | 231 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 213 | - | - | |
Csa03g00963 | 231 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 1 | 213 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa03g00963 | Csa06g00614 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00963 | Csa-Chr3:7849883 | Csa06g00614 | Csa-Chr6:5189706 | 1.38E-51 | dispersed | |
Csa05g00729 | Csa-Chr5:5004155 | Csa03g00963 | Csa-Chr3:7849883 | 3.27E-44 | transposed | |
Csa03g00963 | Csa-Chr3:7849883 | Csa06g00613 | Csa-Chr6:5177900 | 1.97E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31156 | PF03195 | LOB | 1.70E-36 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00963 | K21994 | - | csv:101216934 | 428.328 |