Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00966 ATGGAAGAGAGAGAAGCTATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGCCGGCAAGCGGCGGCGGTTCACCAACAGTCGCCGCTTCGCCAGTAAGCGTGGGGCTACCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAATACGGTCCAGATGGAACGGTAACGATGGCATTGTCACCATTGCCGCTTTCTTCCTCTGCTCCGGCAGCCGGTGGCTTCTCCATTACTAAGCGGGGGAAGGGCCGGCTCGGTGGCTCGGAATTCAAGCATCACAAGAAAATGGGAATGGAATATATAGGAGAATGGAATGCGTGTGCAGTTGGGACAAATTTCATGCCTCATATCATTACGGTCAATGCTGGCGAGGACGTCACTATGAAGATCATATCGTTCTCCCAACAAGGTCCTCGAGCAATCTGTATTCTTTCTGCCAACGGAGTAATTTCTAATGTTACTCTTCGGCAGCCCGATTCTTCGGGTGGTACCTTAACATATGAGGGTCGATTCGAGATACTTTCTTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGACGGGTGGGATGAGTGTCTCCTTGGCAAGCCCCGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAGGCCCAGTTCAGGTTGTAGTGGGGAGTTTCCTACCAACTAGCCAACAGGAGCAGCAGAAGGTAAAAAAGCAGAAACCCGAGTCGATACCAACTGCAGCCCCTGGTTCAGTCCCGAGCATGGCACCACCCACCACTATGCCGACTACCAATGCCGACACAGAAGACAATTTAAATGGGAACGGTGTGCAAAATCCCGGGCCATTAAAACCAGCTGGTTTTGCTCCTTCGCCTTTTCAAAGAGATACTTGGGGTACCAACGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCCCTACCGACATCAATATATCGCTGCCAGGCTAA 1038 51.83 MEEREAINAGVTVIGAEAPSAYHVAPRTDNPPPPASGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACAVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRTGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSQQEQQKVKKQKPESIPTAAPGSVPSMAPPTTMPTTNADTEDNLNGNGVQNPGPLKPAGFAPSPFQRDTWGTNAAVHSLQEPRNSPTDINISLPG* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7872369 7878030 + CsaV3_3G009660.1 Csa03g00966 521871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00966 345 MobiDBLite consensus disorder prediction 20 73 - -
Csa03g00966 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Csa03g00966 345 MobiDBLite consensus disorder prediction 254 322 - -
Csa03g00966 345 MobiDBLite consensus disorder prediction 279 300 - -
Csa03g00966 345 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 344 - -
Csa03g00966 345 Gene3D - 134 263 - -
Csa03g00966 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 253 - -
Csa03g00966 345 CDD DUF296 134 247 IPR005175 -
Csa03g00966 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Csa03g00966 345 ProSiteProfiles PPC domain profile profile. 129 268 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00966 Csa-Chr3:7872369 Csa03g01634 Csa-Chr3:12213375 3.84E-92 dispersed
Csa03g00966 Csa-Chr3:7872369 Csa05g00365 Csa-Chr5:2347041 5.64E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00966 - - csv:101212918 613.609