Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00969 ATGGACTTCCAATCTCACGCTTTGAAATGCTCCGACGATTCGTCAACGTCTTCGGACCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGACAAGAGAACAATTAAGTCCAGATTTTGAGAGCCTAAATCCTCTTAAGTATGTTCCTGTATTAGTTGATGGTCCTGTGGTAGTTTCAGATTCGTACGCGATTTTGCTGTATCTGGAAGAAAAATATCCACAGAAGGCGCTGCTGCCGACTGATCTTCGGTTAAAATCTCGTCATCTTCAAGTGGCAAGTATAGTCAGCTCAAGCATACAACCTCTTATTATGTTGGAATTGCTGAAAACCATCGGGGAAAATTTTGGACCAGAAGAGCCGCTGCCATGGGCACAATCCAATTTAGAAAAAGGCTTCAATGCTCTTGAGAAGCTGGTGAAGGATTTTTCTGGCCAATATGCCCTGGGAGATGAAGTACATATGGCTGATGTATTTTTGGCTCCCCAAATTTCAAGTGCTATTGAGAACTTCGGCATTGACATGTATAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAGACGATACCAGAATTCCAAGCCTCATCGCCAGAAAGGCAACCCGATGCCCTTCATTAA 690 43.91 MDFQSHALKCSDDSSTSSDLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGTREQLSPDFESLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPTDLRLKSRHLQVASIVSSSIQPLIMLELLKTIGENFGPEEPLPWAQSNLEKGFNALEKLVKDFSGQYALGDEVHMADVFLAPQISSAIENFGIDMYKFPTLARIYESYKTIPEFQASSPERQPDALH* 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7891319 7894985 + CsaV3_3G009690.1 Csa03g00969 521874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00969 229 SFLD Main (cytGST) 20 210 - -
Csa03g00969 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 104 229 IPR010987 -
Csa03g00969 229 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 8 228 - -
Csa03g00969 229 Pfam Glutathione S-transferase, N-terminal domain 22 98 IPR004045 -
Csa03g00969 229 PANTHER MALEYLACETOACETATE ISOMERASE 8 228 - -
Csa03g00969 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 18 99 IPR004045 -
Csa03g00969 229 SUPERFAMILY GST C-terminal domain-like 100 227 IPR036282 -
Csa03g00969 229 CDD GST_C_Zeta 108 224 IPR034330 -
Csa03g00969 229 SUPERFAMILY Thioredoxin-like 18 102 IPR036249 -
Csa03g00969 229 Gene3D - 101 229 - -
Csa03g00969 229 CDD GST_N_Zeta 20 92 IPR034333 -
Csa03g00969 229 Gene3D Glutaredoxin 22 98 - -
Csa03g00969 229 TIGRFAM maiA: maleylacetoacetate isomerase 22 227 IPR005955 GO:0003824|GO:0005737|GO:0009072
Csa03g00969 229 SFLD Glutathione Transferase (cytosolic) 20 210 IPR040079 -
Csa03g00969 229 Pfam Glutathione S-transferase, C-terminal domain 146 217 IPR004046 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01635 Csa-Chr2:15494439 Csa03g00969 Csa-Chr3:7891319 9.86E-87 dispersed
Csa02g01638 Csa-Chr2:15513714 Csa03g00969 Csa-Chr3:7891319 1.07E-80 dispersed
Csa03g00969 Csa-Chr3:7891319 Csa03g00999 Csa-Chr3:8073072 7.97E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00969 K01800 - csv:101213403 442.58