Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00985 ATGACCAAAATGCCCTTCCCCTTCACTACATTTCTCCTTCTCCTCTTCCTACCCTTTGTGGCTTCTTCTAATTTTTCGTTGCCTGCGCTGGACTCGGTTCGGTTGGCGCAGACCGGGGTTAGGGAAGCCATAACCGAAATTGGTAATTTAAAACGACGTCAGTTTGGAGATTGGAATCTGCAGGCCGCGCTTCGTGATTGCGCTACGCTCTATGAGGAGGCCGAGTGGCGGCTCGCGGGGATGTTGGTTGGAGAGAATAAGTATAGGGCGGAAGATGGTCGGATGTGGGTCAGCGCCGCCATGGCTAACCATCGGAGTTGTTTGGATGGGTTGGAAGAGGTCCACGATGTGGCGGCGGTGGATGGGAATAACTTGACGGTGATGCTCACTGGAGCTCTGCATTTATACGATAAGATTGCTGCCGTGGAGAAGCGGAACGGACGGAAAAGATTGGGGAAACGGAAATGGAGGGAAAACAGAGGAACCAACTTGGCAACGTGGAATCCGGCGACGTCGAAGGCGAACTATGTGGTGGCGAAGGATGGATCCGGCACCCACAGAACCATAAACAGGGCGGTGGCGGCTCTGGCGAGAAGTGGACGGACACGGCGAGGAGGGAGAATTGTGATATACGTGAAAGCTGGAGTTTACAGGGAGAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGCTTGTCGGCGACGGCATAGACAAAACCATCGTCACTGGTAGCCGCAATGTACCCGACGGCGCCACCACTTATAACTCAGCTACATTCGGCGTTTCCGGCGACGGGTTTTGGGTGAGGGACATAACATTCGAGAACACCGCCGGACCGGGAAAGCAACAAGCGGTGGCGCTACGGCTCAATTCCGACCTTGCCGTCGTATACCGGTGCGCAATAAAAGGCTATCAAGACACCCTCTTCCTCCACTCCCTTCGCCAATTCTACCGCGACTGCAAAATCTATGGCACCATCGACTTCATCTTTGGCAACTCGGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACAGCCGATTCTTCACCAAGCCAACATGATCACTGCCCAAGGCCGCGACGATCCGGCAGAGGCCACCGGATTTTCGATCCTCAACTCCAGAGTCCAGCCGGCACCGGAATTTTCCCCCGTAAAGGCTCAGTACAGGACGTACCTCGGGCGGCCCTGGAAGCGGTTTTCGAGAACGGTGGTAATTGCGACGGATCTGGACGGGTTGATTGATCCGAAAGGGTGGGGAGAATGGACAGGGGATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTTAAGAACAGGGGCGACGGTTCTTCGACGAGATTTAGGGTAAATTGGCCGGGATTTCACATCCTCCGTTCCGCGGAGGAAGCGCGGCCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGATTGGATTCCGGCTACCGGCGTTCCTTTCGAGGCGGGAGTTTGA 1473 54.72 MTKMPFPFTTFLLLLFLPFVASSNFSLPALDSVRLAQTGVREAITEIGNLKRRQFGDWNLQAALRDCATLYEEAEWRLAGMLVGENKYRAEDGRMWVSAAMANHRSCLDGLEEVHDVAAVDGNNLTVMLTGALHLYDKIAAVEKRNGRKRLGKRKWRENRGTNLATWNPATSKANYVVAKDGSGTHRTINRAVAALARSGRTRRGGRIVIYVKAGVYRENVEIGIQLKNVMLVGDGIDKTIVTGSRNVPDGATTYNSATFGVSGDGFWVRDITFENTAGPGKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCKIYGTIDFIFGNSAAVLQNCEIFVRQPILHQANMITAQGRDDPAEATGFSILNSRVQPAPEFSPVKAQYRTYLGRPWKRFSRTVVIATDLDGLIDPKGWGEWTGDFAISTLFYAEFKNRGDGSSTRFRVNWPGFHILRSAEEARPFTVAEFLHGGDWIPATGVPFEAGV* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7995314 7997547 - CsaV3_3G009850.1 Csa03g00985 521890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00985 490 ProSitePatterns Pectinesterase signature 2. 323 332 IPR033131 -
Csa03g00985 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 139 IPR035513 -
Csa03g00985 490 PANTHER PECTINESTERASE 9 489 - -
Csa03g00985 490 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 9 489 - -
Csa03g00985 490 SUPERFAMILY Pectin lyase-like 170 488 IPR011050 -
Csa03g00985 490 SMART PMEI_2 7 135 IPR006501 GO:0004857
Csa03g00985 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 15 117 IPR035513 -
Csa03g00985 490 Pfam Plant invertase/pectin methylesterase inhibitor 32 117 IPR006501 GO:0004857
Csa03g00985 490 CDD PMEI-like_4 32 136 - -
Csa03g00985 490 Pfam Pectinesterase 176 475 IPR000070 GO:0030599|GO:0042545
Csa03g00985 490 Gene3D - 169 490 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00985 Csa-Chr3:7995314 Csa05g02010 Csa-Chr5:23451164 1.46E-144 dispersed
Csa03g00985 Csa-Chr3:7995314 Csa03g00987 Csa-Chr3:8009428 2.82E-125 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00985 K01051 - csv:101217635 959.518