Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00987 ATGGCAAGACACACGATCGTGTTTTTCGTTGTTCTTATTGTTCTTATTTTTCCGTCAGACATTTTATGTTATTCGGAAAAAGAAATAAAAAATTGGTGTAGCCAAACACCATATCCAGCACCATGTGAAGAATTTCTCAAAACCAAAGCTACTACAAAGAAAACTCCAATAACCACAAAATCCCATTTCTTTGAAATCTTAGTCGAAACGGCACTAGAGCGTGCCGTTTCAGCCCATAAAAATGCTCTTTCTCTCGGCCCAAAATGCCGAAATTCCAAAGAAAAAACTGCATGGACCGATTGCGTTGACCTCTACGACCAAATCATAACCCGACTCAACCGAACCTCTGCCCGCTGCTCACCAGCCGACGCTCAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACAGGGTTCGAAGAACTCGGCCTTTCGGCTTTCGGCTACCCATTGACGGCTAATAATGTTTCCAAGCTGATTAGTGATGGGTTGTCGGTGAATAAACCCGCATCACCGGAGGGGTATGAGCCGACGACCATGACTGATGGGTTTCCCACGTGGGTTAGTCCTGGTAACCGTAAATTGCTGCAATCTGAGTCTCCGAAGGCGGACGTAGTGGTGGCGCAAGATGGGTCGGGGAATTTTAAGACGGTGAAGGATGCTATCTCCGCCGCAAAGGGCGGCGGGAGATTTGTGATATATATAAAGTCGGGGGTTTATAATGAGAATTTGGATATTAAGGCTAAGAATGTTATGATGGTCGGCGACGGAATCGGAAAAACTATCATTACCGGCAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCTACCGTTGCCGTTGATGGAGACGGATTCATCGCCAGAGACATAACTTTCAGAAACACCGCCGGAGCAAAGAACCACCAAGCGGTAGCGCTCCGATCAGGTTCAGATCTCTCAGTCTTCTACCGTTGTGGCTTCGAAGGCTATCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGTACCGTCGATTTCATCTTCGGCAATGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGTGATCCTCCGAACAAAACCATCACCCTCACCGCCCAAGGCCGCTCCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCCGAATCACATCCTCTGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCATGGAGGCAATATTCCCGGACGGTTGTTATGAAATCCTCGATCGGAGGATTCATAAGTCCGGCGGGGTGGATGCCGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGCCGAGTATATGAATACGGGGCCGGGAGCGTCGACGGCGAATCGGGTGAACTGGAAGGGTTATCATGTGATTACCAGTGCGTCGGAGGCTTCGAAGTTCACCGTGGGGAATTTCATCGCCGGTGGGTCTTGGTTGCCGAGTACGGGTGTGCCTTTCACTTCCGGTCTCTAA 1530 50.46 MARHTIVFFVVLIVLIFPSDILCYSEKEIKNWCSQTPYPAPCEEFLKTKATTKKTPITTKSHFFEILVETALERAVSAHKNALSLGPKCRNSKEKTAWTDCVDLYDQIITRLNRTSARCSPADAQTWLSAALTALETCRTGFEELGLSAFGYPLTANNVSKLISDGLSVNKPASPEGYEPTTMTDGFPTWVSPGNRKLLQSESPKADVVVAQDGSGNFKTVKDAISAAKGGGRFVIYIKSGVYNENLDIKAKNVMMVGDGIGKTIITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRITSSGGLSGVKAYLGRPWRQYSRTVVMKSSIGGFISPAGWMPWSGNFALNTLYYAEYMNTGPGASTANRVNWKGYHVITSASEASKFTVGNFIAGGSWLPSTGVPFTSGL* 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8009428 8014268 + CsaV3_3G009870.1 Csa03g00987 521892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00987 509 PANTHER PECTINESTERASE 6 508 - -
Csa03g00987 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 149 IPR006501 GO:0004857
Csa03g00987 509 ProSitePatterns Pectinesterase signature 1. 230 249 IPR018040 -
Csa03g00987 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Csa03g00987 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Csa03g00987 509 Gene3D - 201 509 IPR012334 -
Csa03g00987 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Csa03g00987 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 165 IPR006501 GO:0004857
Csa03g00987 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Csa03g00987 509 PANTHER PECTINESTERASE 6 508 - -
Csa03g00987 509 CDD PMEI-like_3 32 174 - -
Csa03g00987 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Csa03g00987 509 SMART PMEI_2 24 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00987 Csa-Chr3:8009428 Csa05g00496 Csa-Chr5:3205369 0 dispersed
Csa03g00985 Csa-Chr3:7995314 Csa03g00987 Csa-Chr3:8009428 2.82E-125 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00987 K01051 - csv:101217552 1006.51