Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00996 ATGCTCTCTTCACATCTAATACCTTCGAAAAACCCTCTTTCCACCAACCCCACTTCCTCTTTTTCCCCATTCTACCCAAATCTCCTCTCAACCGTCCGATCGAAACTCCCCCATCGCCCCCATATCTCCACCTTCGCCTCCATTTATGGCGTCTCTTCAAAACCCACCTCGCAGACTATCAATCCAATCCTCAAACCGAGGCAATTCTGCAAAATTCCTGTGAACCCTGTTGGGTTTCTTCCTTCAAAGCTTAACTCCCATGTCCCCGCCGCCGCTGCCGCAGATGGCGGCGATACAACCGCTGATTCCGCCCCCAACAGCAAAAAATTTCAGCTAGCCATCGTCTTTGGACTCTGGTATTTTCAGAACATCGTCTTCAATATCTATAACAAGAAGGTTCTAAACATTTTTTCTTTCCCATGGCTTCTCGCATCGTTTCAACTCTTCGCTGGATCTGTTTGGATGCTTGTTCTCTGGTCCTTTAAGCTTCAGCCGTGTCCTAAAATCTCTAAGCCCTTTCTCATCGCTCTCCTCGGCCCCGCTTTATTTCACACAATCGGCCATATCTCCGCTTGTGTCTCGTTCTCTAAAGTCGCTGTTTCTTTCACTCATGTGATTAAGTCGGCTGAACCAGTGTTTTCGGTTCTGTTCTCCTCGTTCCTTGGCGATTCGTACCCAATCCAGGTCTGGCTCTCGATTCTCCCCATTGTTTTTGGTTGCTCTCTAGCCGCCATTACTGAAGCTACCTTCAATTTGGAAGGTCTCTCAGGCGCTATGATCAGTAATGTAGGGTTTGTATTAAGAAACATTTACTCTAAAAGGAGCTTGCAGAACTTCAAAGAGGTTAATGGGTTGAATTTATATGGTTGTATTAGTATAATTTCTTTGTTGTATCTGTTTCCTGTGGCCATTTTCGTTGAAGGGTCAAAGTGGGTTCAAGGATATCATCAAGCAATTGCTTCCATTGGAAATGCTTCTACACTATATATCTGGGTTTTGATTTCTGGAATCTTTTATCATCTTTATAATCAATCTTCTTACCAAGCTTTAGATGAAATCAGTCCTTTGACATTCTCTGTTGGTAATACAATGAAGAGAGTGGTTGTGATTGTGGCTTCTGTGTTGGTTTTTAGAAATCCAGTTAGGCCTTTGAATGCTGTTGGTTCTGCCATTGCCATTTTTGGGACTTTTCTGTATTCTCAGGCAACAAGTAAAAAGAGTTCTAAGAAGATTGAGGAAGGTGAAGAAAAGAAGGATTGA 1260 43.33 MLSSHLIPSKNPLSTNPTSSFSPFYPNLLSTVRSKLPHRPHISTFASIYGVSSKPTSQTINPILKPRQFCKIPVNPVGFLPSKLNSHVPAAAAADGGDTTADSAPNSKKFQLAIVFGLWYFQNIVFNIYNKKVLNIFSFPWLLASFQLFAGSVWMLVLWSFKLQPCPKISKPFLIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGDSYPIQVWLSILPIVFGCSLAAITEATFNLEGLSGAMISNVGFVLRNIYSKRSLQNFKEVNGLNLYGCISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVASVLVFRNPVRPLNAVGSAIAIFGTFLYSQATSKKSSKKIEEGEEKKD* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8059633 8062049 - CsaV3_3G009960.1 Csa03g00996 521901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00996 419 PANTHER SOLUTE CARRIER FAMILY 35 71 413 - -
Csa03g00996 419 PANTHER XYLULOSE 5-PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC 71 413 - -
Csa03g00996 419 Pfam Triose-phosphate Transporter family 111 400 IPR004853 -
Csa03g00996 419 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 111 410 IPR004696 GO:0016021|GO:0022857|GO:0055085
Csa03g00996 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 294 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00856 Csa-Chr1:5365097 Csa03g00996 Csa-Chr3:8059633 9.63E-72 dispersed
Csa03g00996 Csa-Chr3:8059633 Csa05g01908 Csa-Chr5:22240296 4.04E-70 dispersed
Csa03g00996 Csa-Chr3:8059633 Csa03g00529 Csa-Chr3:4405822 2.47E-100 transposed
Csa03g00996 Csa-Chr3:8059633 Csa06g03531 Csa-Chr6:28754571 2.62E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00996 K15283 - csv:101219051 795.808