Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00999 ATGGGAGATGAACTAAAGCTATTGATCAGAACGTCAAGTCCGTACATTCTAAGAATAGTATGGGCGTTGAAATTGAAAGGGTTAGAATATGATACCGTTTATGATGATCAAGATCTGAATGGCAACAATAACCCGATCCACAAGAATGTTCCTGTGCTGCTGCTTCATGATGGAAAACCGATCGTTGAACCGCTCATCATCCTCGAATACATCGACGAAATTTGGAGCCAAAATCCATTGCTTTCTCAAGATCCTTACAAGAAAGCTCTTTTGCCATCTATAAAGAAAGCCTTCACATCAAACCAAGACAAAGAAGAGGGCAGAGAAGAAGCCTTGAAGAATTGGAAGCATTTGGAAGAAGAGTTAAAGGAAAAGAGGTTTTTTGGAGGGGAAGGCATTGGGCTTGTGGATATTGTAGTTGGATGGATTGCATATTCACTCAATGTAATGGAGGAAATGATTGGACATGATGGACCTCAATTGATGATAACACCAGAAAGAACATGGTCCAGTCCATTCCCTCTGAGAATAGTATGGGCATTGAAATTGAAAGGGATAGAATACGAAACCGTTTATGAGGATCTGGCCAACAAGAGTCCATTGCTTTTGGAGTACAATCCCATTCACAAGAAGGTTCCAGTGCTCGTCCATGGCGGAAAGCCGATCGCCGAATCCCTCGTTATTCTCGAATACATCGAAGAAACATGGAAGCAGAATCCATTACTGCCTCAGGATCCTTACCAGAGAGCTGTTGCTCGCTTTTGGGCTAAATTTGGGGATGACAAGGTTTTGGAATCTATAAAGAAAGTGTTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCATGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAAGGAAAGAGGTTCTTTGGAGGAGAGGCCATTGGGTTTGTGGATATTGCAGTTGGGTGGCTTGCAAACATAGTTAGTGTAATGGAGGAAGTTGTTGGACTTGAATTGATAACTGAAGAAAGGTTTCCCCTTTTATCCAAATGGACAAAGGAATTTGCTGCTGCTCCAATCATCAATGAAAACTGGCCACCTAGAGACAAGCTTATCACTAAGTACCAAGCATTGTATCAAACCTATATGACTAAACAAGAATAA 1143 41.38 MGDELKLLIRTSSPYILRIVWALKLKGLEYDTVYDDQDLNGNNNPIHKNVPVLLLHDGKPIVEPLIILEYIDEIWSQNPLLSQDPYKKALLPSIKKAFTSNQDKEEGREEALKNWKHLEEELKEKRFFGGEGIGLVDIVVGWIAYSLNVMEEMIGHDGPQLMITPERTWSSPFPLRIVWALKLKGIEYETVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIEETWKQNPLLPQDPYQRAVARFWAKFGDDKVLESIKKVFMNQGKVREEGVEEAMENLKHLEEELKGKRFFGGEAIGFVDIAVGWLANIVSVMEEVVGLELITEERFPLLSKWTKEFAAAPIINENWPPRDKLITKYQALYQTYMTKQE* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8073072 8078476 - CsaV3_3G009990.1 Csa03g00999 521904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00999 380 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 154 IPR045073 -
Csa03g00999 380 SUPERFAMILY GST C-terminal domain-like 73 158 IPR036282 -
Csa03g00999 380 SUPERFAMILY GST C-terminal domain-like 234 375 IPR036282 -
Csa03g00999 380 Pfam Glutathione S-transferase, N-terminal domain 169 233 IPR004045 -
Csa03g00999 380 Pfam Glutathione S-transferase, N-terminal domain 5 73 IPR004045 -
Csa03g00999 380 SFLD Main.3: Omega- and Tau-like 168 378 IPR045073 -
Csa03g00999 380 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 167 372 IPR045073 -
Csa03g00999 380 Coils Coil 279 299 - -
Csa03g00999 380 Gene3D - 81 168 - -
Csa03g00999 380 Gene3D Glutaredoxin 169 241 - -
Csa03g00999 380 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 167 372 - -
Csa03g00999 380 SUPERFAMILY Thioredoxin-like 4 81 IPR036249 -
Csa03g00999 380 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 245 368 IPR010987 -
Csa03g00999 380 CDD GST_N_Tau 169 236 - -
Csa03g00999 380 CDD GST_C_Tau 246 365 IPR045074 GO:0004364|GO:0006749
Csa03g00999 380 Gene3D - 242 379 - -
Csa03g00999 380 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 79 IPR004045 -
Csa03g00999 380 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 1 154 - -
Csa03g00999 380 SUPERFAMILY Thioredoxin-like 168 262 IPR036249 -
Csa03g00999 380 Gene3D Glutaredoxin 1 80 - -
Csa03g00999 380 Pfam Glutathione S-transferase, C-terminal domain 89 146 IPR004046 -
Csa03g00999 380 Pfam Glutathione S-transferase, C-terminal domain 276 352 IPR004046 -
Csa03g00999 380 SFLD Main (cytGST) 168 378 - -
Csa03g00999 380 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 161 240 IPR004045 -
Csa03g00999 380 Coils Coil 101 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00415 Csa-Chr1:2594894 Csa03g00999 Csa-Chr3:8073072 1.44E-33 dispersed
Csa03g00969 Csa-Chr3:7891319 Csa03g00999 Csa-Chr3:8073072 7.97E-11 dispersed
Csa03g00999 Csa-Chr3:8073072 Csa04g01567 Csa-Chr4:15153192 1.44E-35 dispersed
Csa03g01147 Csa-Chr3:8987537 Csa03g00999 Csa-Chr3:8073072 7.08E-18 dispersed
Csa04g01569 Csa-Chr4:15158782 Csa03g00999 Csa-Chr3:8073072 2.80E-28 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00999 K00799 - csv:101219529 437.187