Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01017 ATGATGGAGGTGAGTTGGGGAGTGGCGGCGGCGGTGACGGCGTTAGCGGGTGCAGCGGCGGTGGTGTTTGCGGTGTTGAAATGGGCAGCGAAGAGTTTGAACGAGTGGATTTATGAGGCCAAATTAGGGGACCGGCGGATGGCTTTGCCGCCTGGGGATTTGGGATGGCCTTTGATTGGAAATATGTTGGGTTTTCTTAGAGCCTTCAAGTCTAACAATCCTGAAACCTTCATTGATAGCTATGTTTCCAGGTTTGGGAAAATCGGAGTGTACAAAATTCATTTGTTTGGAAACCCCAGCGTGGTCGTGACGACGCCGGAGACATGCCGGAAAGTTCTGACCGACGACGAAGCCTTCCAGCCCGGTTGGCCACGAGCAGCTGTAGAGCTCATTGGAAAGAAGTCCTTCATCGAAATGCCGGTCGAGGAACACAAGCGCCTCCGCCGCTTAACCTCTGCTCCGGTGAACGGCTTTGAAGCTTTGAGCAACTACATTCCTTACATTGAAGAGAATGTATTGAAATCCTTGGATAAATGGTCGAATATGGGACCAATCGAATTCTTAACTCAACTTCGTAAGCTCACATTCACCATTATCATGTACATTTTCCTTAGCGCGGAGAGTGAGTCGGTAATGGAATCGTTAGAGAAGGAGTATACTCGGCTTAACTATGGTGTTCGAGCCCTGAGAATTAACATTCCTGGATTTGCTTACCACAAAGCACTCAAGGCTCGGAAGAATCTTGTGGCTGCGTTTCAAGGAATTGTGACGGAGCGAAGAAAGAGAAGATTGGGCAATTGGGCGCCGAAGAGGAAGGACATGATGGACGCTCTGATTGATGTTGAAGATGAAAATGGCAGAAAGTTGACTGATGAGGAGATCATTGACATTCTGGTGATGTACTTGAATGCAGGTCATGAATCTTCAGGCCATACCATGATGTGGGCAACTATTTTGTTGAATCAACACCCAGAAGTTCTCAAGAAAGCCAAGGAGGAACAGGAGGAGATTGTGAGAAGGAGGCCTGCAGGTCAAAAGGGATTGACATTGAAAGAATGCAGGGATATGGAATATCTCTCGAAAGTGGTCGATGAAACTCTTCGCTACGTATCATTCTCCCTTGTTGTCTTCAGAGAAGCACAAATGGATGTCAATCTCAATGGCTATCTAATTCCCAAGGGTTGGAAAGTGCTGGCTTGGTTCAGAAGCATTCACTATGACGATGAAGTTTACCCAGACCCAAAGAAATTTGATCCTTCAAGATGGGATGGATTTATCCCAAAAGCAGGAGAGTTTCTTCCATTTGGAGCAGGAAGCAGGCTGTGCCCAGGAAATGATCTAGCCAAATTAGAGATTTGTATTTTCATTCACTATTTTCTCCTCAATTACAAGCTTGAATGGCTGACCCCTGATTGTCAAATCTTGTATCTGCCCCATTCAAGGCCAAAGGACAATTGCTTGGCTAAAATCAGTAAGAATTCCAGCACTGTTGTGTGA 1497 46.29 MMEVSWGVAAAVTALAGAAAVVFAVLKWAAKSLNEWIYEAKLGDRRMALPPGDLGWPLIGNMLGFLRAFKSNNPETFIDSYVSRFGKIGVYKIHLFGNPSVVVTTPETCRKVLTDDEAFQPGWPRAAVELIGKKSFIEMPVEEHKRLRRLTSAPVNGFEALSNYIPYIEENVLKSLDKWSNMGPIEFLTQLRKLTFTIIMYIFLSAESESVMESLEKEYTRLNYGVRALRINIPGFAYHKALKARKNLVAAFQGIVTERRKRRLGNWAPKRKDMMDALIDVEDENGRKLTDEEIIDILVMYLNAGHESSGHTMMWATILLNQHPEVLKKAKEEQEEIVRRRPAGQKGLTLKECRDMEYLSKVVDETLRYVSFSLVVFREAQMDVNLNGYLIPKGWKVLAWFRSIHYDDEVYPDPKKFDPSRWDGFIPKAGEFLPFGAGSRLCPGNDLAKLEICIFIHYFLLNYKLEWLTPDCQILYLPHSRPKDNCLAKISKNSSTVV* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8181393 8186484 - CsaV3_3G010170.1 Csa03g01017 521922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01017 498 SUPERFAMILY Cytochrome P450 45 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 Gene3D Cytochrome P450 40 493 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PANTHER CYTOCHROME P450 26 20 486 - -
Csa03g01017 498 Pfam Cytochrome P450 50 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Csa03g01017 498 PANTHER ENT-KAURENOIC ACID OXIDASE 2 20 486 - -
Csa03g01017 498 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa03g01017 498 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01017 Csa-Chr3:8181393 Csa03g04634 Csa-Chr3:40256809 1.51E-126 dispersed
Csa06g03781 Csa-Chr6:30048644 Csa03g01017 Csa-Chr3:8181393 6.42E-32 transposed
Csa03g01017 Csa-Chr3:8181393 Csa03g04632 Csa-Chr3:40248054 6.12E-165 wgd
Csa03g00192 Csa-Chr3:1435165 Csa03g01017 Csa-Chr3:8181393 1.65E-160 wgd
Csa03g01017 Csa-Chr3:8181393 Csa06g00652 Csa-Chr6:5421216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01017 K04123 - csv:101221667 997.267