Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g01027 | ATGCCTCCAAGGAAGAAGCCTTCTTCCAAGAAACTCAATTCAAATCAACAATCACAGCCTTCCAAGTTCGGAATCGAACACTTCTTCGAACGACACTCTCAAAATGTTTCGCATTCTCAGAAGATTTCTTCACAAACTTCCGATTCGAAGACTGATGTTTCCAACTCAATGAATCGTGGAGATGATCGGAATATGGGACGGTTAGATTCTAAGGACGCGGCTGGGGCTGCGGCGGCGACAGCTCAGAAGTCAGAGTCGAGGGTGCTTCTTGTGAGTGATGCGGTTTTAGCTTCTGAAAACCCTAAGGTACTGCAGAGGAATGATGCTAGTTGTTCGCCTCTGAATACGACGCCTGAGAATTTGATTGCAGCTCGTGGAAATGATGGCGATGACTCTTCTAACGAGCTCTCTCCAGAATTTTCCAAGTCCGTTTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGTCAGGACGAGGGGACTAGAACTGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGCCGGAGACTATAAGAGTTTTGGCGAACTCATCAAGGCTAAGCTCTTTGAGAATTAGACAGTGTTCACGAAATAAGACTTCCTCTGTCGAGTCTGGGAACTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAATAGCTTCGTTAAATAAGACTGGATTGAAAAGGGTAAATCCTAAGCATGACGGGGAACCCATTGGAGTTGTGAATGATAGTTTGAGTAGCTCTAGAGTAGCTAACAGTCCGAGTCGATTCCAGACGCCCCCATCTTTGTCATACTGCGACAAGGTTGCCAATGATGTTGCTGCATGTAATGAAGCACCTGATCATCCTATTTTAAGACCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTGCCGTTGATACAGTGGCTTCTTCAATTGACTTGGGGGACGATTCATCTGAATTAAAAGGTAGAAATGGTAAAACATTGACTGCCAGAGTTGATTCAGCTGCAATGAAAATCCCTAAACGGGTTTCAGACACTGTAATGAAGGCATGCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACGTATGGAGTAAAACGCTCGTATAAGGTTCTGCGTTTGTTAAATGAGCAAAGTGGAGAAGAACGGGCTGCATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCTCCTGGAGACACTGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATGTTGACCGCGACAATAATTTCGTTATCCTACACCCCGATATACTAGTGTCAGGGACTCGGGTTGCTGGTCATTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCTGTTGCAGCATTAATTGGTACTTTGCTGCATCAGGTTTTTCAGGCTGGTCTTGTAGAAGAGGCACCGGCTGTAGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTTTATGCATGCGGAGCAAATGAAAAGGATATACGCATAACCATGAATGAAGCAGTTCCAAAAATTTTACATTGGATCGCCATGTTCAAAGGCCCAATGGGTTCTAAAGCACCTTCTATTGAGTTTAGATCTGAGGATGATCCCAGGAAAGTTAGTATATCAGAGGTGATTGATATTGAGGAGATGGCTTGGGCTCCCAAATATGGTTTGAAAGGAATAATTGATGCTTCTGTCAGGGTAAATGTAATGTCAGATTATAATAAATGTGCCGTGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGCGCCCAAGTGATCTTGTACACACTACTTATGTCTGAGAGGTATCAAAAACATGTTGGTTATGGTCTCCTGTACTATCTTCGGTCAAATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATCACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGCACCATTTATCATAAGATGCAAAATGGAAGCAAAGAGACCAGTGGGCTTGGAGTCTTATTTGAATCTCATACAGATCACTTGCAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGATGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTACAGATAAAAATCAAACGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCAGCTACTGTTTTGTGCGTCAAGATTCAAATAATGATAGTTCAAACACTGCTTCAATAAATGACATGGACAGTTCACTTAGAGTTGGTGACTATGTGATACTCAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGTGTCCATGTATCTGTTTCTTTTTCTAAGCGTCTACGTCTGCCTGGAAGCACTTCTTCTACAGAAGCACGTGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTCGTACAACTGTTTCTGCAAGGTGAGCAAAATGCTCATCTAAGGAAGTTGATAGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATTTGGTCAGAGAAGAATTTAAATGATGACCAACGGCGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCCCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCTATTTTGCTCACGTCTTACACAAACTCTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATCAATGCAGTGCATGAAGATATTCGCAGCCATTGCTTCTCGGAGTTGAACATTCAAAGTGTGGAAGACATCAAAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACCTGTTTGGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACTCTTCCGGTTTCCCTTGGGCCTTTGATGTTTGCTTCTACATTTGTCCTTGTTGGCGATCACTATCAGTTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCTGCTTTACAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAATGCTTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCAAATGCAAAGCTTGAATTTTCAAGTTCAAAGTTGTCTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTGTTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCAGAGGTGACGAAAGGATTGCTTGATGGTGGAATTAAGGGGAGTGAAGTTGGGATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTCTAGCTATCAACATTGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGACAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGCGAAAATCCAAAGAGCTGTACTACCTCACTCCTTGGAGACTGGCATCGAATTAACGTAGCCATTACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCATTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATATTAAGTGTAACAAGGAATGATATACTACATCAAAGCAACAATCTCCCTAGTTGCACATAG | 4140 | 42.37 | MPPRKKPSSKKLNSNQQSQPSKFGIEHFFERHSQNVSHSQKISSQTSDSKTDVSNSMNRGDDRNMGRLDSKDAAGAAAATAQKSESRVLLVSDAVLASENPKVLQRNDASCSPLNTTPENLIAARGNDGDDSSNELSPEFSKSVSLKRFKFSPGMLIKQSQDEGTRTDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVESGNFEQLSSPNPKPSERSIASLNKTGLKRVNPKHDGEPIGVVNDSLSSSRVANSPSRFQTPPSLSYCDKVANDVAACNEAPDHPILRPHKKALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVMKACPCDFLVLEVTEKCELADTYGVKRSYKVLRLLNEQSGEERAAYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDRDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSVAALIGTLLHQVFQAGLVEEAPAVAFLEEVSRTVLQKSMENVYACGANEKDIRITMNEAVPKILHWIAMFKGPMGSKAPSIEFRSEDDPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSDYNKCAVNVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSNQTQGIRVQRSDLVGLIMRRNELANNILKASTAQSLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFESHTDHLQASHGIFFQHWERLIDLEAKEMELVKRGVWHSRSTDKNQTSTCLSSIVLSTLDDQPHCTFEKDNRISYCFVRQDSNNDSSNTASINDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSVHVSVSFSKRLRLPGSTSSTEARDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNSAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIKMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSEETANAKLEFSSSKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGSEVGIITPYNSQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVTRNDILHQSNNLPSCT* | 1380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8267429 | 8280683 | - | CsaV3_3G010270.1 | Csa03g01027 | 521932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g01027 | 1379 | PANTHER | DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE | 4 | 1372 | - | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Csa03g01027 | 1379 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 960 | 1347 | IPR027417 | - | |
Csa03g01027 | 1379 | Gene3D | - | 834 | 903 | - | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 35 | 61 | - | - | |
Csa03g01027 | 1379 | CDD | SF1_C_Upf1 | 1162 | 1355 | IPR041679 | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 212 | 276 | - | - | |
Csa03g01027 | 1379 | Pfam | DNA replication factor Dna2 | 404 | 606 | IPR014808 | - | |
Csa03g01027 | 1379 | Gene3D | - | 904 | 1052 | IPR027417 | - | |
Csa03g01027 | 1379 | Gene3D | - | 1058 | 1159 | IPR027417 | - | |
Csa03g01027 | 1379 | CDD | DEXXQc_DNA2 | 961 | 1161 | - | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
Csa03g01027 | 1379 | Gene3D | - | 459 | 723 | IPR011604 | - | |
Csa03g01027 | 1379 | Gene3D | - | 1160 | 1374 | IPR027417 | - | |
Csa03g01027 | 1379 | Pfam | AAA domain | 1139 | 1338 | IPR041679 | - | |
Csa03g01027 | 1379 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 4 | 1372 | IPR045055 | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 260 | 276 | - | - | |
Csa03g01027 | 1379 | MobiDBLite | consensus disorder prediction | 212 | 243 | - | - | |
Csa03g01027 | 1379 | Pfam | AAA domain | 961 | 1053 | IPR041677 | GO:0004386 | |
Csa03g01027 | 1379 | Pfam | AAA domain | 1062 | 1129 | IPR041677 | GO:0004386 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g01027 | Csa-Chr3:8267429 | Csa03g03618 | Csa-Chr3:32238456 | 1.44E-45 | dispersed | |
Csa03g00208 | Csa-Chr3:1635213 | Csa03g01027 | Csa-Chr3:8267429 | 1.26E-35 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g01027 | K10742 | - | csv:101220726 | 2664.8 |