Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01027 ATGCCTCCAAGGAAGAAGCCTTCTTCCAAGAAACTCAATTCAAATCAACAATCACAGCCTTCCAAGTTCGGAATCGAACACTTCTTCGAACGACACTCTCAAAATGTTTCGCATTCTCAGAAGATTTCTTCACAAACTTCCGATTCGAAGACTGATGTTTCCAACTCAATGAATCGTGGAGATGATCGGAATATGGGACGGTTAGATTCTAAGGACGCGGCTGGGGCTGCGGCGGCGACAGCTCAGAAGTCAGAGTCGAGGGTGCTTCTTGTGAGTGATGCGGTTTTAGCTTCTGAAAACCCTAAGGTACTGCAGAGGAATGATGCTAGTTGTTCGCCTCTGAATACGACGCCTGAGAATTTGATTGCAGCTCGTGGAAATGATGGCGATGACTCTTCTAACGAGCTCTCTCCAGAATTTTCCAAGTCCGTTTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGTCAGGACGAGGGGACTAGAACTGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGCCGGAGACTATAAGAGTTTTGGCGAACTCATCAAGGCTAAGCTCTTTGAGAATTAGACAGTGTTCACGAAATAAGACTTCCTCTGTCGAGTCTGGGAACTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAATAGCTTCGTTAAATAAGACTGGATTGAAAAGGGTAAATCCTAAGCATGACGGGGAACCCATTGGAGTTGTGAATGATAGTTTGAGTAGCTCTAGAGTAGCTAACAGTCCGAGTCGATTCCAGACGCCCCCATCTTTGTCATACTGCGACAAGGTTGCCAATGATGTTGCTGCATGTAATGAAGCACCTGATCATCCTATTTTAAGACCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTGCCGTTGATACAGTGGCTTCTTCAATTGACTTGGGGGACGATTCATCTGAATTAAAAGGTAGAAATGGTAAAACATTGACTGCCAGAGTTGATTCAGCTGCAATGAAAATCCCTAAACGGGTTTCAGACACTGTAATGAAGGCATGCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACGTATGGAGTAAAACGCTCGTATAAGGTTCTGCGTTTGTTAAATGAGCAAAGTGGAGAAGAACGGGCTGCATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCTCCTGGAGACACTGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATGTTGACCGCGACAATAATTTCGTTATCCTACACCCCGATATACTAGTGTCAGGGACTCGGGTTGCTGGTCATTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCTGTTGCAGCATTAATTGGTACTTTGCTGCATCAGGTTTTTCAGGCTGGTCTTGTAGAAGAGGCACCGGCTGTAGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTTTATGCATGCGGAGCAAATGAAAAGGATATACGCATAACCATGAATGAAGCAGTTCCAAAAATTTTACATTGGATCGCCATGTTCAAAGGCCCAATGGGTTCTAAAGCACCTTCTATTGAGTTTAGATCTGAGGATGATCCCAGGAAAGTTAGTATATCAGAGGTGATTGATATTGAGGAGATGGCTTGGGCTCCCAAATATGGTTTGAAAGGAATAATTGATGCTTCTGTCAGGGTAAATGTAATGTCAGATTATAATAAATGTGCCGTGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGCGCCCAAGTGATCTTGTACACACTACTTATGTCTGAGAGGTATCAAAAACATGTTGGTTATGGTCTCCTGTACTATCTTCGGTCAAATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATCACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGCACCATTTATCATAAGATGCAAAATGGAAGCAAAGAGACCAGTGGGCTTGGAGTCTTATTTGAATCTCATACAGATCACTTGCAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGATGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTACAGATAAAAATCAAACGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCAGCTACTGTTTTGTGCGTCAAGATTCAAATAATGATAGTTCAAACACTGCTTCAATAAATGACATGGACAGTTCACTTAGAGTTGGTGACTATGTGATACTCAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGTGTCCATGTATCTGTTTCTTTTTCTAAGCGTCTACGTCTGCCTGGAAGCACTTCTTCTACAGAAGCACGTGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTCGTACAACTGTTTCTGCAAGGTGAGCAAAATGCTCATCTAAGGAAGTTGATAGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATTTGGTCAGAGAAGAATTTAAATGATGACCAACGGCGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCCCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCTATTTTGCTCACGTCTTACACAAACTCTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATCAATGCAGTGCATGAAGATATTCGCAGCCATTGCTTCTCGGAGTTGAACATTCAAAGTGTGGAAGACATCAAAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACCTGTTTGGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACTCTTCCGGTTTCCCTTGGGCCTTTGATGTTTGCTTCTACATTTGTCCTTGTTGGCGATCACTATCAGTTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCTGCTTTACAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAATGCTTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCAAATGCAAAGCTTGAATTTTCAAGTTCAAAGTTGTCTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTGTTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCAGAGGTGACGAAAGGATTGCTTGATGGTGGAATTAAGGGGAGTGAAGTTGGGATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTCTAGCTATCAACATTGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGACAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGCGAAAATCCAAAGAGCTGTACTACCTCACTCCTTGGAGACTGGCATCGAATTAACGTAGCCATTACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCATTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATATTAAGTGTAACAAGGAATGATATACTACATCAAAGCAACAATCTCCCTAGTTGCACATAG 4140 42.37 MPPRKKPSSKKLNSNQQSQPSKFGIEHFFERHSQNVSHSQKISSQTSDSKTDVSNSMNRGDDRNMGRLDSKDAAGAAAATAQKSESRVLLVSDAVLASENPKVLQRNDASCSPLNTTPENLIAARGNDGDDSSNELSPEFSKSVSLKRFKFSPGMLIKQSQDEGTRTDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVESGNFEQLSSPNPKPSERSIASLNKTGLKRVNPKHDGEPIGVVNDSLSSSRVANSPSRFQTPPSLSYCDKVANDVAACNEAPDHPILRPHKKALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVMKACPCDFLVLEVTEKCELADTYGVKRSYKVLRLLNEQSGEERAAYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDRDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSVAALIGTLLHQVFQAGLVEEAPAVAFLEEVSRTVLQKSMENVYACGANEKDIRITMNEAVPKILHWIAMFKGPMGSKAPSIEFRSEDDPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSDYNKCAVNVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSNQTQGIRVQRSDLVGLIMRRNELANNILKASTAQSLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFESHTDHLQASHGIFFQHWERLIDLEAKEMELVKRGVWHSRSTDKNQTSTCLSSIVLSTLDDQPHCTFEKDNRISYCFVRQDSNNDSSNTASINDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSVHVSVSFSKRLRLPGSTSSTEARDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNSAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIKMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSEETANAKLEFSSSKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGSEVGIITPYNSQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVTRNDILHQSNNLPSCT* 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8267429 8280683 - CsaV3_3G010270.1 Csa03g01027 521932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01027 1379 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 4 1372 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 1 84 - -
Csa03g01027 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 960 1347 IPR027417 -
Csa03g01027 1379 Gene3D - 834 903 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 35 61 - -
Csa03g01027 1379 CDD SF1_C_Upf1 1162 1355 IPR041679 -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 212 276 - -
Csa03g01027 1379 Pfam DNA replication factor Dna2 404 606 IPR014808 -
Csa03g01027 1379 Gene3D - 904 1052 IPR027417 -
Csa03g01027 1379 Gene3D - 1058 1159 IPR027417 -
Csa03g01027 1379 CDD DEXXQc_DNA2 961 1161 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 8 23 - -
Csa03g01027 1379 Gene3D - 459 723 IPR011604 -
Csa03g01027 1379 Gene3D - 1160 1374 IPR027417 -
Csa03g01027 1379 Pfam AAA domain 1139 1338 IPR041679 -
Csa03g01027 1379 PANTHER DNA2/NAM7 HELICASE FAMILY 4 1372 IPR045055 -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 260 276 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 212 243 - -
Csa03g01027 1379 Pfam AAA domain 961 1053 IPR041677 GO:0004386
Csa03g01027 1379 Pfam AAA domain 1062 1129 IPR041677 GO:0004386
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01027 Csa-Chr3:8267429 Csa03g03618 Csa-Chr3:32238456 1.44E-45 dispersed
Csa03g00208 Csa-Chr3:1635213 Csa03g01027 Csa-Chr3:8267429 1.26E-35 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01027 K10742 - csv:101220726 2664.8