Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g01027 ATGCCTCCAAGGAAGAAGCCTTCTTCCAAGAAACTCAATTCAAATCAACAATCACAGCCTTCCAAGTTCGGAATCGAACACTTCTTCGAACGACACTCTCAAAATGTTTCGCATTCTCAGAAGATTTCTTCACAAACTTCCGATTCGAAGACTGATGTTTCCAACTCAATGAATCGTGGAGATGATCGGAATATGGGACGGTTAGATTCTAAGGACGCGGCTGGGGCTGCGGCGGCGACAGCTCAGAAGTCAGAGTCGAGGGTGCTTCTTGTGAGTGATGCGGTTTTAGCTTCTGAAAACCCTAAGGTACTGCAGAGGAATGATGCTAGTTGTTCGCCTCTGAATACGACGCCTGAGAATTTGATTGCAGCTCGTGGAAATGATGGCGATGACTCTTCTAACGAGCTCTCTCCAGAATTTTCCAAGTCCGTTTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGTCAGGACGAGGGGACTAGAACTGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCGAAGCAATTGCCGGAGACTATAAGAGTTTTGGCGAACTCATCAAGGCTAAGCTCTTTGAGAATTAGACAGTGTTCACGAAATAAGACTTCCTCTGTCGAGTCTGGGAACTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAATAGCTTCGTTAAATAAGACTGGATTGAAAAGGGTAAATCCTAAGCATGACGGGGAACCCATTGGAGTTGTGAATGATAGTTTGAGTAGCTCTAGAGTAGCTAACAGTCCGAGTCGATTCCAGACGCCCCCATCTTTGTCATACTGCGACAAGGTTGCCAATGATGTTGCTGCATGTAATGAAGCACCTGATCATCCTATTTTAAGACCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATTGCCGTTGATACAGTGGCTTCTTCAATTGACTTGGGGGACGATTCATCTGAATTAAAAGGTAGAAATGGTAAAACATTGACTGCCAGAGTTGATTCAGCTGCAATGAAAATCCCTAAACGGGTTTCAGACACTGTAATGAAGGCATGCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACGTATGGAGTAAAACGCTCGTATAAGGTTCTGCGTTTGTTAAATGAGCAAAGTGGAGAAGAACGGGCTGCATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCTCCTGGAGACACTGTGAATGTTATTGGTGAATTTGATGACCAAGGAAGATGTCATGTTGACCGCGACAATAATTTCGTTATCCTACACCCCGATATACTAGTGTCAGGGACTCGGGTTGCTGGTCATTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCTGTTGCAGCATTAATTGGTACTTTGCTGCATCAGGTTTTTCAGGCTGGTCTTGTAGAAGAGGCACCGGCTGTAGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTTTATGCATGCGGAGCAAATGAAAAGGATATACGCATAACCATGAATGAAGCAGTTCCAAAAATTTTACATTGGATCGCCATGTTCAAAGGCCCAATGGGTTCTAAAGCACCTTCTATTGAGTTTAGATCTGAGGATGATCCCAGGAAAGTTAGTATATCAGAGGTGATTGATATTGAGGAGATGGCTTGGGCTCCCAAATATGGTTTGAAAGGAATAATTGATGCTTCTGTCAGGGTAAATGTAATGTCAGATTATAATAAATGTGCCGTGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGCGCCCAAGTGATCTTGTACACACTACTTATGTCTGAGAGGTATCAAAAACATGTTGGTTATGGTCTCCTGTACTATCTTCGGTCAAATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATCACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGCACCATTTATCATAAGATGCAAAATGGAAGCAAAGAGACCAGTGGGCTTGGAGTCTTATTTGAATCTCATACAGATCACTTGCAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGATGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTACAGATAAAAATCAAACGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCAGCTACTGTTTTGTGCGTCAAGATTCAAATAATGATAGTTCAAACACTGCTTCAATAAATGACATGGACAGTTCACTTAGAGTTGGTGACTATGTGATACTCAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGTGTCCATGTATCTGTTTCTTTTTCTAAGCGTCTACGTCTGCCTGGAAGCACTTCTTCTACAGAAGCACGTGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTCGTACAACTGTTTCTGCAAGGTGAGCAAAATGCTCATCTAAGGAAGTTGATAGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATTTGGTCAGAGAAGAATTTAAATGATGACCAACGGCGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCCCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCTATTTTGCTCACGTCTTACACAAACTCTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATCAATGCAGTGCATGAAGATATTCGCAGCCATTGCTTCTCGGAGTTGAACATTCAAAGTGTGGAAGACATCAAAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACCTGTTTGGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACTCTTCCGGTTTCCCTTGGGCCTTTGATGTTTGCTTCTACATTTGTCCTTGTTGGCGATCACTATCAGTTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCTGCTTTACAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAATGCTTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCAAATGCAAAGCTTGAATTTTCAAGTTCAAAGTTGTCTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTGTTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCAGAGGTGACGAAAGGATTGCTTGATGGTGGAATTAAGGGGAGTGAAGTTGGGATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTCTAGCTATCAACATTGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGACAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGCGAAAATCCAAAGAGCTGTACTACCTCACTCCTTGGAGACTGGCATCGAATTAACGTAGCCATTACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCATTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATATTAAGTGTAACAAGGAATGATATACTACATCAAAGCAACAATCTCCCTAGTTGCACATAG 4140 42.37 MPPRKKPSSKKLNSNQQSQPSKFGIEHFFERHSQNVSHSQKISSQTSDSKTDVSNSMNRGDDRNMGRLDSKDAAGAAAATAQKSESRVLLVSDAVLASENPKVLQRNDASCSPLNTTPENLIAARGNDGDDSSNELSPEFSKSVSLKRFKFSPGMLIKQSQDEGTRTDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVESGNFEQLSSPNPKPSERSIASLNKTGLKRVNPKHDGEPIGVVNDSLSSSRVANSPSRFQTPPSLSYCDKVANDVAACNEAPDHPILRPHKKALLELLDQVEDVIAVDTVASSIDLGDDSSELKGRNGKTLTARVDSAAMKIPKRVSDTVMKACPCDFLVLEVTEKCELADTYGVKRSYKVLRLLNEQSGEERAAYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDRDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSVAALIGTLLHQVFQAGLVEEAPAVAFLEEVSRTVLQKSMENVYACGANEKDIRITMNEAVPKILHWIAMFKGPMGSKAPSIEFRSEDDPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSDYNKCAVNVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSNQTQGIRVQRSDLVGLIMRRNELANNILKASTAQSLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFESHTDHLQASHGIFFQHWERLIDLEAKEMELVKRGVWHSRSTDKNQTSTCLSSIVLSTLDDQPHCTFEKDNRISYCFVRQDSNNDSSNTASINDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSVHVSVSFSKRLRLPGSTSSTEARDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNSAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIKMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSEETANAKLEFSSSKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGSEVGIITPYNSQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVTRNDILHQSNNLPSCT* 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8267429 8280683 - CsaV3_3G010270.1 Csa03g01027 521932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g01027 1379 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 4 1372 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 1 84 - -
Csa03g01027 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 960 1347 IPR027417 -
Csa03g01027 1379 Gene3D - 834 903 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 35 61 - -
Csa03g01027 1379 CDD SF1_C_Upf1 1162 1355 IPR041679 -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 212 276 - -
Csa03g01027 1379 Pfam DNA replication factor Dna2 404 606 IPR014808 -
Csa03g01027 1379 Gene3D - 904 1052 IPR027417 -
Csa03g01027 1379 Gene3D - 1058 1159 IPR027417 -
Csa03g01027 1379 CDD DEXXQc_DNA2 961 1161 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 8 23 - -
Csa03g01027 1379 Gene3D - 459 723 IPR011604 -
Csa03g01027 1379 Gene3D - 1160 1374 IPR027417 -
Csa03g01027 1379 Pfam AAA domain 1139 1338 IPR041679 -
Csa03g01027 1379 PANTHER DNA2/NAM7 HELICASE FAMILY 4 1372 IPR045055 -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 260 276 - -
Csa03g01027 1379 MobiDBLite consensus disorder prediction 212 243 - -
Csa03g01027 1379 Pfam AAA domain 961 1053 IPR041677 GO:0004386
Csa03g01027 1379 Pfam AAA domain 1062 1129 IPR041677 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g01027 K10742 DNA2; DNA replication ATP-dependent helicase/nuclease Dna2 [EC:5.6.2.3 3.1.-.-] - csv:101220726 2664.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01027 Csa-Chr3:8267429 Csa03g03618 Csa-Chr3:32238456 1.44E-45 dispersed
Csa03g00208 Csa-Chr3:1635213 Csa03g01027 Csa-Chr3:8267429 1.26E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G14700 65.9 1.7e-269 925.6
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G14700 62.1 9.4e-172 600.9
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G12620 67.8 4.4e-278 954.1
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G12620 64.7 3.2e-180 629.0
Csa02g01983 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.2 6.3e-141 497.3
Csa05g00861 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.2 7.7e-157 550.4
Csa06g00062 . 3 417 Core DNA Replication Machinery Family AT4G29910 57.1 1.5e-131 466.8
Csa02g00864 . 1 274 Core DNA Replication Machinery Family AT1G26840 63.6 8.3e-91 330.5
Csa07g01193 . 4 799 Core DNA Replication Machinery Family AT1G79150 59.1 2.3e-245 845.5
Csa03g02982 . 12 939 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1347.4
Csa06g03777 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.5 1.4e-267 918.7
Csa07g00021 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.2 0.0e+00 1154.0
Csa02g00251 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.9
Csa06g03933 . 7 840 Core DNA Replication Machinery Family AT5G44635 71.7 0.0e+00 1189.5
Csa07g01905 . 4 722 Core DNA Replication Machinery Family AT4G02060 84.7 0.0e+00 1214.5
Csa06g01433 . 38 504 Core DNA Replication Machinery Family AT2G29680 61.5 4.2e-162 568.2
Csa06g01433 . 5 465 Core DNA Replication Machinery Family AT1G07270 55.8 2.3e-138 489.2
Csa07g01526 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-256 882.5
Csa03g03246 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.1 0.0e+00 1098.2
Csa07g00576 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.6 5.4e-287 983.4
Csa02g01390 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.9 1.6e-116 416.4
Csa04g01776 . 7 180 Core DNA Replication Machinery Family AT1G77320 71.3 8.0e-72 269.2
Csa02g00004 . 1 141 Core DNA Replication Machinery Family AT1G77320 56.0 6.0e-43 173.3
Csa04g02777 . 2 146 Core DNA Replication Machinery Family AT1G77320 52.4 4.4e-38 157.1
Csa07g02169 . 1 201 Core DNA Replication Machinery Family AT1G80190 68.5 1.1e-76 283.1
Csa04g00968 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT1G19080 67.2 5.9e-69 257.3
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT3G55490 67.2 5.9e-69 257.3
Csa03g00879 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.7 8.2e-50 193.7
Csa02g01434 . 1 1545 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1746.1
Csa01g00615 . 26 649 Core DNA Replication Machinery Family AT1G67630 61.9 1.5e-217 752.7
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g03138 . 7 451 Core DNA Replication Machinery Family AT5G41880 65.8 1.3e-178 622.9
Csa06g02735 . 1 1091 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1726.5
Csa03g03577 . 1 438 Core DNA Replication Machinery Family AT2G42120 74.7 2.1e-202 701.8
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g00569 . 1 126 Core DNA Replication Machinery Family AT1G09815 61.1 2.3e-37 151.8
Csa06g01291 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2980.7
Csa06g01291 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.6 0.0e+00 2940.6
Csa01g02219 . 7 486 Core DNA Replication Machinery Family AT5G22110 68.7 6.8e-189 657.1
Csa06g02480 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.8 6.4e-310 1060.1
Csa03g00353 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Csa04g02134 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.2 5.6e-177 617.1
Csa04g01779 . 1 331 Core DNA Replication Machinery Family AT1G21690 81.9 9.9e-152 533.1
Csa06g02139 . 1 364 Core DNA Replication Machinery Family AT1G77470 76.1 4.8e-155 544.3
Csa02g00027 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.0 1.0e-250 862.8
Csa03g00107 . 32 705 Core DNA Replication Machinery Family AT2G06510 51.0 3.7e-200 694.9
Csa01g00297 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 8.1e-245 843.2
Csa03g00107 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.4 1.7e-235 812.8
Csa01g00297 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 1.4e-239 825.9
Csa03g00107 . 5 800 Core DNA Replication Machinery Family AT4G19130 54.2 1.3e-229 793.1
Csa01g02708 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.2 4.8e-188 654.1
Csa03g01027 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.6e-301 1032.3
Csa04g00346 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.8 1.5e-116 416.0
Csa06g01233 . 1 802 Core DNA Replication Machinery Family AT1G08130 66.7 1.3e-298 1022.3
Csa06g01233 . 201 802 Core DNA Replication Machinery Family AT1G49250 69.2 3.1e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007869 2 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g01027 Csa_Chr03 FPKM 15.487586 19.02466 2.749528 2.802118 14.728585 13.036849 14.769156 0.906211 0.71223 0.734333